Potassium in PDB 8cts: Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
Protein crystallography data
The structure of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K), PDB code: 8cts
was solved by
B.Lee,
K.I.White,
M.A.Socolich,
M.A.Klureza,
R.Henning,
V.Srajer,
R.Ranganathan,
D.Hekstra,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.41 /
1.60
|
Space group
|
I 4
|
Cell size a, b, c (Å), α, β, γ (°)
|
68.816,
68.816,
90.365,
90,
90,
90
|
R / Rfree (%)
|
14.1 /
15.4
|
Potassium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Potassium atom in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
(pdb code 8cts). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 11 binding sites of Potassium where determined in the
Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K), PDB code: 8cts:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Potassium binding site 1 out
of 11 in 8cts
Go back to
Potassium Binding Sites List in 8cts
Potassium binding site 1 out
of 11 in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K210
b:6.8
occ:0.25
|
OG1
|
A:THR63
|
2.7
|
6.0
|
1.0
|
HB
|
A:THR63
|
3.1
|
6.4
|
1.0
|
O
|
A:THR63
|
3.1
|
5.0
|
1.0
|
CB
|
A:THR63
|
3.5
|
5.3
|
1.0
|
K
|
A:K211
|
3.5
|
3.6
|
0.2
|
C
|
A:THR63
|
3.9
|
3.8
|
1.0
|
CA
|
A:THR63
|
4.3
|
4.3
|
1.0
|
HG23
|
A:THR63
|
4.6
|
9.9
|
1.0
|
CG2
|
A:THR63
|
4.7
|
8.2
|
1.0
|
HA
|
A:VAL64
|
4.7
|
4.4
|
1.0
|
HA
|
A:THR63
|
4.8
|
5.1
|
1.0
|
K
|
A:K215
|
4.9
|
72.8
|
0.2
|
N
|
A:VAL64
|
4.9
|
3.7
|
1.0
|
|
Potassium binding site 2 out
of 11 in 8cts
Go back to
Potassium Binding Sites List in 8cts
Potassium binding site 2 out
of 11 in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K211
b:3.6
occ:0.25
|
O
|
A:THR63
|
2.6
|
5.0
|
1.0
|
O
|
A:VAL64
|
2.9
|
3.8
|
1.0
|
K
|
A:K212
|
3.2
|
3.3
|
0.2
|
K
|
A:K210
|
3.5
|
6.8
|
0.2
|
HA
|
A:VAL64
|
3.6
|
4.4
|
1.0
|
C
|
A:VAL64
|
3.6
|
3.3
|
1.0
|
C
|
A:THR63
|
3.8
|
3.8
|
1.0
|
CA
|
A:VAL64
|
4.1
|
3.6
|
1.0
|
HA3
|
A:GLY65
|
4.3
|
3.7
|
1.0
|
N
|
A:VAL64
|
4.4
|
3.7
|
1.0
|
HB
|
A:THR63
|
4.5
|
6.4
|
1.0
|
N
|
A:GLY65
|
4.6
|
2.9
|
1.0
|
CA
|
A:GLY65
|
4.9
|
3.0
|
1.0
|
CA
|
A:THR63
|
5.0
|
4.3
|
1.0
|
|
Potassium binding site 3 out
of 11 in 8cts
Go back to
Potassium Binding Sites List in 8cts
Potassium binding site 3 out
of 11 in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K212
b:3.3
occ:0.25
|
O
|
A:GLY65
|
2.8
|
2.7
|
1.0
|
O
|
A:VAL64
|
2.8
|
3.8
|
1.0
|
K
|
A:K211
|
3.2
|
3.6
|
0.2
|
HA3
|
A:GLY65
|
3.4
|
3.7
|
1.0
|
K
|
A:K213
|
3.4
|
5.4
|
0.2
|
C
|
A:GLY65
|
3.5
|
2.6
|
1.0
|
CA
|
A:GLY65
|
3.9
|
3.0
|
1.0
|
C
|
A:VAL64
|
4.0
|
3.3
|
1.0
|
HA
|
A:TYR66
|
4.2
|
3.7
|
1.0
|
N
|
A:GLY65
|
4.4
|
2.9
|
1.0
|
N
|
A:TYR66
|
4.4
|
3.1
|
1.0
|
CA
|
A:TYR66
|
4.8
|
3.1
|
1.0
|
HA2
|
A:GLY65
|
4.8
|
3.7
|
1.0
|
|
Potassium binding site 4 out
of 11 in 8cts
Go back to
Potassium Binding Sites List in 8cts
Potassium binding site 4 out
of 11 in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K213
b:5.4
occ:0.25
|
K
|
A:K214
|
2.6
|
74.3
|
0.2
|
O
|
A:TYR66
|
2.7
|
3.5
|
1.0
|
O
|
A:GLY65
|
3.1
|
2.7
|
1.0
|
C
|
A:TYR66
|
3.4
|
3.3
|
1.0
|
K
|
A:K212
|
3.4
|
3.3
|
0.2
|
HA
|
A:TYR66
|
3.6
|
3.7
|
1.0
|
HA3
|
A:GLY67
|
3.9
|
4.6
|
1.0
|
CA
|
A:TYR66
|
4.0
|
3.1
|
1.0
|
C
|
A:GLY65
|
4.2
|
2.6
|
1.0
|
N
|
A:GLY67
|
4.3
|
3.7
|
1.0
|
CA
|
A:GLY67
|
4.6
|
3.8
|
1.0
|
N
|
A:TYR66
|
4.6
|
3.1
|
1.0
|
O
|
A:HOH312
|
4.7
|
40.1
|
1.0
|
H
|
A:GLY67
|
4.9
|
4.5
|
1.0
|
|
Potassium binding site 5 out
of 11 in 8cts
Go back to
Potassium Binding Sites List in 8cts
Potassium binding site 5 out
of 11 in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K214
b:74.3
occ:0.25
|
O
|
A:HOH312
|
2.5
|
40.1
|
1.0
|
K
|
A:K213
|
2.6
|
5.4
|
0.2
|
O
|
A:TYR66
|
2.9
|
3.5
|
1.0
|
HA3
|
A:GLY67
|
3.5
|
4.6
|
1.0
|
C
|
A:TYR66
|
4.1
|
3.3
|
1.0
|
CA
|
A:GLY67
|
4.4
|
3.8
|
1.0
|
O
|
A:HOH323
|
4.5
|
51.9
|
0.2
|
N
|
A:GLY67
|
4.7
|
3.7
|
1.0
|
C
|
A:GLY67
|
4.8
|
6.1
|
1.0
|
O
|
A:GLY67
|
5.0
|
7.4
|
1.0
|
|
Potassium binding site 6 out
of 11 in 8cts
Go back to
Potassium Binding Sites List in 8cts
Potassium binding site 6 out
of 11 in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K215
b:72.8
occ:0.25
|
HE2
|
A:PHE92
|
3.6
|
22.4
|
0.4
|
HZ
|
A:PHE92
|
4.0
|
21.3
|
0.4
|
CE2
|
A:PHE92
|
4.2
|
18.7
|
0.4
|
CZ
|
A:PHE92
|
4.4
|
17.7
|
0.4
|
OG1
|
A:THR63
|
4.8
|
6.0
|
1.0
|
K
|
A:K210
|
4.9
|
6.8
|
0.2
|
|
Potassium binding site 7 out
of 11 in 8cts
Go back to
Potassium Binding Sites List in 8cts
Potassium binding site 7 out
of 11 in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K211
b:12.8
occ:0.25
|
O
|
B:TYR66
|
2.7
|
12.3
|
1.0
|
O
|
B:GLY65
|
3.1
|
8.9
|
1.0
|
C
|
B:TYR66
|
3.4
|
12.6
|
1.0
|
K
|
B:K215
|
3.5
|
8.0
|
0.2
|
HA
|
B:TYR66
|
3.6
|
12.6
|
1.0
|
HA3
|
B:GLY67
|
3.9
|
14.7
|
1.0
|
CA
|
B:TYR66
|
4.0
|
10.5
|
1.0
|
C
|
B:GLY65
|
4.2
|
8.3
|
1.0
|
N
|
B:GLY67
|
4.2
|
11.2
|
1.0
|
CA
|
B:GLY67
|
4.6
|
12.3
|
1.0
|
N
|
B:TYR66
|
4.6
|
9.7
|
1.0
|
H
|
B:GLY67
|
4.9
|
13.4
|
1.0
|
|
Potassium binding site 8 out
of 11 in 8cts
Go back to
Potassium Binding Sites List in 8cts
Potassium binding site 8 out
of 11 in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K212
b:75.8
occ:0.25
|
HE2
|
B:PHE92
|
3.4
|
16.3
|
0.3
|
HZ
|
B:PHE92
|
4.1
|
22.0
|
0.3
|
CE2
|
B:PHE92
|
4.1
|
13.6
|
0.3
|
CZ
|
B:PHE92
|
4.5
|
18.3
|
0.3
|
|
Potassium binding site 9 out
of 11 in 8cts
Go back to
Potassium Binding Sites List in 8cts
Potassium binding site 9 out
of 11 in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 9 of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K213
b:7.2
occ:0.25
|
OG1
|
B:THR63
|
2.7
|
6.0
|
1.0
|
HB
|
B:THR63
|
3.0
|
7.5
|
1.0
|
O
|
B:THR63
|
3.0
|
6.9
|
1.0
|
CB
|
B:THR63
|
3.4
|
6.2
|
1.0
|
K
|
B:K214
|
3.5
|
6.4
|
0.2
|
C
|
B:THR63
|
3.9
|
6.0
|
1.0
|
CA
|
B:THR63
|
4.3
|
5.4
|
1.0
|
HG21
|
B:THR63
|
4.6
|
10.7
|
1.0
|
CG2
|
B:THR63
|
4.7
|
8.9
|
1.0
|
HA
|
B:VAL64
|
4.7
|
6.7
|
1.0
|
HA
|
B:THR63
|
4.8
|
6.5
|
1.0
|
N
|
B:VAL64
|
4.9
|
5.2
|
1.0
|
|
Potassium binding site 10 out
of 11 in 8cts
Go back to
Potassium Binding Sites List in 8cts
Potassium binding site 10 out
of 11 in the Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K)
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 10 of Room Temperature Crystal Structure of A K+ Selective Nak Mutant (NAK2K) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K214
b:6.4
occ:0.25
|
O
|
B:THR63
|
2.6
|
6.9
|
1.0
|
O
|
B:VAL64
|
2.9
|
7.0
|
1.0
|
K
|
B:K215
|
3.2
|
8.0
|
0.2
|
K
|
B:K213
|
3.5
|
7.2
|
0.2
|
HA
|
B:VAL64
|
3.6
|
6.7
|
1.0
|
C
|
B:VAL64
|
3.6
|
6.4
|
1.0
|
C
|
B:THR63
|
3.8
|
6.0
|
1.0
|
CA
|
B:VAL64
|
4.0
|
5.6
|
1.0
|
HA3
|
B:GLY65
|
4.2
|
9.1
|
1.0
|
N
|
B:VAL64
|
4.4
|
5.2
|
1.0
|
HB
|
B:THR63
|
4.5
|
7.5
|
1.0
|
N
|
B:GLY65
|
4.6
|
6.8
|
1.0
|
CA
|
B:GLY65
|
4.8
|
7.6
|
1.0
|
CA
|
B:THR63
|
4.9
|
5.4
|
1.0
|
|
Reference:
B.Lee,
K.I.White,
M.A.Socolich,
M.A.Klureza,
R.Henning,
V.Srajer,
R.Ranganathan,
D.Hekstra.
Direct Visualization of Electric Field-Stimulated Ion Conduction in A Potassium Channel To Be Published.
Page generated: Sat Aug 9 16:27:52 2025
|