Atomistry » Potassium » PDB 9dkf-9gef » 9dxx
Atomistry »
  Potassium »
    PDB 9dkf-9gef »
      9dxx »

Potassium in PDB 9dxx: Crystal Structure of the A/Puerto Rico/8/1934 (H1N1) Influenza Virus Hemagglutinin in Complex with D-Peptide

Protein crystallography data

The structure of Crystal Structure of the A/Puerto Rico/8/1934 (H1N1) Influenza Virus Hemagglutinin in Complex with D-Peptide, PDB code: 9dxx was solved by R.U.Kadam, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.02 / 2.37
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 107.693, 107.693, 387.162, 90, 90, 120
R / Rfree (%) 19.5 / 23.9

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the A/Puerto Rico/8/1934 (H1N1) Influenza Virus Hemagglutinin in Complex with D-Peptide (pdb code 9dxx). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of the A/Puerto Rico/8/1934 (H1N1) Influenza Virus Hemagglutinin in Complex with D-Peptide, PDB code: 9dxx:

Potassium binding site 1 out of 1 in 9dxx

Go back to Potassium Binding Sites List in 9dxx
Potassium binding site 1 out of 1 in the Crystal Structure of the A/Puerto Rico/8/1934 (H1N1) Influenza Virus Hemagglutinin in Complex with D-Peptide


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the A/Puerto Rico/8/1934 (H1N1) Influenza Virus Hemagglutinin in Complex with D-Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K101

b:57.8
occ:1.00
O E:HOH211 2.8 55.2 1.0
OXT E:DCY21 2.8 48.4 1.0
O E:GLY19 2.9 37.8 1.0
OXT E:DCY17 3.0 51.0 1.0
OXT E:DAS14 3.0 59.2 1.0
O E:HOH210 3.0 59.0 1.0
C E:DCY17 3.8 49.2 1.0
O E:HOH201 3.9 52.8 1.0
C E:GLY19 3.9 39.0 1.0
C E:DCY21 4.0 48.3 1.0
C E:DAS14 4.1 60.8 1.0
CB E:DCY17 4.2 45.4 1.0
O E:DPR18 4.3 41.5 1.0
C E:DPR18 4.4 47.4 1.0
N E:DCY21 4.4 40.9 1.0
CA E:DCY17 4.4 47.3 1.0
N E:GLY19 4.4 49.2 1.0
N E:DCY17 4.6 48.9 1.0
CA E:GLY19 4.7 38.2 1.0
CA E:DCY21 4.7 47.2 1.0
N E:DPR18 4.8 47.3 1.0
C E:HMF20 4.8 43.8 1.0
CD1 E:DIL22 4.8 45.4 1.0
CA E:DSN15 4.8 59.6 1.0
N E:DSN15 4.9 62.2 1.0
N E:HMF20 4.9 34.7 1.0
CB E:DAS14 4.9 54.6 1.0
CA E:DAS14 4.9 58.9 1.0

Reference:

R.U.Kadam, I.A.Wilson. De Novo Design of D-Peptide Ligands To Be Published.
Page generated: Sat Aug 9 18:49:37 2025

Last articles

Mg in 4DV1
Mg in 4DUZ
Mg in 4DUY
Mg in 4DR7
Mg in 4DR6
Mg in 4DR5
Mg in 4DUX
Mg in 4DUW
Mg in 4DUV
Mg in 4DUO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy