Potassium in PDB 8ctn: Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Protein crystallography data
The structure of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field), PDB code: 8ctn
was solved by
B.Lee,
K.I.White,
M.A.Socolich,
M.A.Klureza,
R.Henning,
V.Srajer,
R.Ranganathan,
D.Hekstra,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
21.42 /
2.01
|
Space group
|
I 4
|
Cell size a, b, c (Å), α, β, γ (°)
|
68.816,
68.816,
90.365,
90,
90,
90
|
R / Rfree (%)
|
15.3 /
19.8
|
Potassium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Potassium atom in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
(pdb code 8ctn). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 12 binding sites of Potassium where determined in the
Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field), PDB code: 8ctn:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Potassium binding site 1 out
of 12 in 8ctn
Go back to
Potassium Binding Sites List in 8ctn
Potassium binding site 1 out
of 12 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K207
b:12.4
occ:0.19
|
O
|
A:TYR66
|
2.7
|
12.1
|
1.0
|
K
|
A:K212
|
3.0
|
21.1
|
0.0
|
O
|
A:GLY65
|
3.2
|
13.8
|
1.0
|
C
|
A:TYR66
|
3.4
|
17.0
|
1.0
|
K
|
A:K208
|
3.7
|
9.1
|
0.2
|
HA
|
A:TYR66
|
3.7
|
14.4
|
1.0
|
HA3
|
A:GLY67
|
3.9
|
16.0
|
1.0
|
CA
|
A:TYR66
|
4.1
|
12.0
|
1.0
|
N
|
A:GLY67
|
4.3
|
14.5
|
1.0
|
C
|
A:GLY65
|
4.3
|
16.5
|
1.0
|
CA
|
A:GLY67
|
4.6
|
13.3
|
1.0
|
N
|
A:TYR66
|
4.7
|
12.8
|
1.0
|
H
|
A:GLY67
|
4.9
|
17.4
|
1.0
|
|
Potassium binding site 2 out
of 12 in 8ctn
Go back to
Potassium Binding Sites List in 8ctn
Potassium binding site 2 out
of 12 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K208
b:9.1
occ:0.23
|
O
|
A:VAL64
|
2.8
|
12.6
|
1.0
|
O
|
A:GLY65
|
2.9
|
13.8
|
1.0
|
K
|
A:K209
|
3.0
|
12.7
|
0.2
|
C
|
A:GLY65
|
3.5
|
16.5
|
1.0
|
HA3
|
A:GLY65
|
3.6
|
16.1
|
1.0
|
K
|
A:K207
|
3.7
|
12.4
|
0.2
|
C
|
A:VAL64
|
3.9
|
11.6
|
1.0
|
CA
|
A:GLY65
|
4.0
|
13.4
|
1.0
|
HA
|
A:TYR66
|
4.3
|
14.4
|
1.0
|
N
|
A:GLY65
|
4.4
|
13.8
|
1.0
|
N
|
A:TYR66
|
4.5
|
12.8
|
1.0
|
CA
|
A:TYR66
|
4.8
|
12.0
|
1.0
|
HA2
|
A:GLY65
|
4.9
|
16.1
|
1.0
|
|
Potassium binding site 3 out
of 12 in 8ctn
Go back to
Potassium Binding Sites List in 8ctn
Potassium binding site 3 out
of 12 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K209
b:12.7
occ:0.25
|
O
|
A:THR63
|
2.7
|
16.9
|
1.0
|
O
|
A:VAL64
|
2.8
|
12.6
|
1.0
|
K
|
A:K208
|
3.0
|
9.1
|
0.2
|
C
|
A:VAL64
|
3.6
|
11.6
|
1.0
|
HA
|
A:VAL64
|
3.6
|
13.8
|
1.0
|
K
|
A:K210
|
3.7
|
14.8
|
0.2
|
C
|
A:THR63
|
3.9
|
12.7
|
1.0
|
CA
|
A:VAL64
|
4.0
|
11.5
|
1.0
|
HA3
|
A:GLY65
|
4.3
|
16.1
|
1.0
|
N
|
A:VAL64
|
4.4
|
11.4
|
1.0
|
N
|
A:GLY65
|
4.5
|
13.8
|
1.0
|
HB
|
A:THR63
|
4.6
|
14.7
|
1.0
|
CA
|
A:GLY65
|
4.8
|
13.4
|
1.0
|
|
Potassium binding site 4 out
of 12 in 8ctn
Go back to
Potassium Binding Sites List in 8ctn
Potassium binding site 4 out
of 12 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K210
b:14.8
occ:0.24
|
OG1
|
A:THR63
|
2.8
|
9.4
|
1.0
|
HB
|
A:THR63
|
3.0
|
14.7
|
1.0
|
O
|
A:THR63
|
3.1
|
16.9
|
1.0
|
CB
|
A:THR63
|
3.4
|
12.2
|
1.0
|
K
|
A:K209
|
3.7
|
12.7
|
0.2
|
C
|
A:THR63
|
3.9
|
12.7
|
1.0
|
CA
|
A:THR63
|
4.3
|
11.0
|
1.0
|
HG23
|
A:THR63
|
4.4
|
17.5
|
1.0
|
CG2
|
A:THR63
|
4.6
|
14.6
|
1.0
|
HA
|
A:VAL64
|
4.7
|
13.8
|
1.0
|
HA
|
A:THR63
|
4.8
|
13.2
|
1.0
|
N
|
A:VAL64
|
4.9
|
11.4
|
1.0
|
O
|
A:THR62
|
5.0
|
14.2
|
1.0
|
|
Potassium binding site 5 out
of 12 in 8ctn
Go back to
Potassium Binding Sites List in 8ctn
Potassium binding site 5 out
of 12 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K211
b:67.7
occ:0.25
|
HE2
|
A:PHE92
|
3.4
|
34.5
|
0.2
|
CE2
|
A:PHE92
|
4.1
|
28.7
|
0.2
|
HZ
|
A:PHE92
|
4.4
|
25.9
|
0.2
|
CZ
|
A:PHE92
|
4.6
|
21.6
|
0.2
|
|
Potassium binding site 6 out
of 12 in 8ctn
Go back to
Potassium Binding Sites List in 8ctn
Potassium binding site 6 out
of 12 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K212
b:21.1
occ:0.04
|
K
|
A:K207
|
3.0
|
12.4
|
0.2
|
O
|
A:TYR66
|
3.3
|
12.1
|
1.0
|
HA3
|
A:GLY67
|
3.8
|
16.0
|
1.0
|
C
|
A:TYR66
|
4.4
|
17.0
|
1.0
|
CA
|
A:GLY67
|
4.6
|
13.3
|
1.0
|
C
|
A:GLY67
|
4.9
|
18.2
|
1.0
|
O
|
A:GLY67
|
5.0
|
14.9
|
1.0
|
|
Potassium binding site 7 out
of 12 in 8ctn
Go back to
Potassium Binding Sites List in 8ctn
Potassium binding site 7 out
of 12 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K212
b:16.9
occ:0.24
|
O
|
B:TYR66
|
2.6
|
15.7
|
1.0
|
O
|
B:GLY65
|
3.1
|
15.2
|
1.0
|
C
|
B:TYR66
|
3.4
|
21.5
|
1.0
|
K
|
B:K217
|
3.7
|
44.0
|
0.1
|
K
|
B:K213
|
3.7
|
15.2
|
0.2
|
HA
|
B:TYR66
|
3.7
|
17.0
|
1.0
|
HA3
|
B:GLY67
|
3.9
|
25.2
|
1.0
|
CA
|
B:TYR66
|
4.1
|
14.2
|
1.0
|
C
|
B:GLY65
|
4.2
|
15.8
|
1.0
|
N
|
B:GLY67
|
4.3
|
18.1
|
1.0
|
CA
|
B:GLY67
|
4.6
|
21.0
|
1.0
|
N
|
B:TYR66
|
4.7
|
12.0
|
1.0
|
H
|
B:GLY67
|
4.9
|
21.8
|
1.0
|
|
Potassium binding site 8 out
of 12 in 8ctn
Go back to
Potassium Binding Sites List in 8ctn
Potassium binding site 8 out
of 12 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K213
b:15.2
occ:0.25
|
O
|
B:GLY65
|
2.7
|
15.2
|
1.0
|
O
|
B:VAL64
|
2.8
|
13.3
|
1.0
|
K
|
B:K214
|
3.0
|
15.3
|
0.2
|
HA3
|
B:GLY65
|
3.3
|
22.5
|
1.0
|
C
|
B:GLY65
|
3.4
|
15.8
|
1.0
|
K
|
B:K212
|
3.7
|
16.9
|
0.2
|
CA
|
B:GLY65
|
3.8
|
18.7
|
1.0
|
C
|
B:VAL64
|
3.9
|
11.1
|
1.0
|
N
|
B:GLY65
|
4.3
|
15.0
|
1.0
|
N
|
B:TYR66
|
4.4
|
12.0
|
1.0
|
HA
|
B:TYR66
|
4.4
|
17.0
|
1.0
|
HA2
|
B:GLY65
|
4.7
|
22.5
|
1.0
|
CA
|
B:TYR66
|
4.8
|
14.2
|
1.0
|
|
Potassium binding site 9 out
of 12 in 8ctn
Go back to
Potassium Binding Sites List in 8ctn
Potassium binding site 9 out
of 12 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 9 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K214
b:15.3
occ:0.25
|
O
|
B:THR63
|
2.7
|
16.3
|
1.0
|
O
|
B:VAL64
|
2.7
|
13.3
|
1.0
|
K
|
B:K213
|
3.0
|
15.2
|
0.2
|
C
|
B:VAL64
|
3.5
|
11.1
|
1.0
|
HA
|
B:VAL64
|
3.6
|
14.4
|
1.0
|
K
|
B:K215
|
3.6
|
14.8
|
0.2
|
C
|
B:THR63
|
3.9
|
12.6
|
1.0
|
CA
|
B:VAL64
|
4.0
|
12.0
|
1.0
|
HA3
|
B:GLY65
|
4.1
|
22.5
|
1.0
|
N
|
B:VAL64
|
4.4
|
13.6
|
1.0
|
N
|
B:GLY65
|
4.4
|
15.0
|
1.0
|
HB
|
B:THR63
|
4.6
|
13.7
|
1.0
|
CA
|
B:GLY65
|
4.7
|
18.7
|
1.0
|
|
Potassium binding site 10 out
of 12 in 8ctn
Go back to
Potassium Binding Sites List in 8ctn
Potassium binding site 10 out
of 12 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 10 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction, No Electric Field) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K215
b:14.8
occ:0.25
|
OG1
|
B:THR63
|
2.8
|
12.1
|
1.0
|
O
|
B:THR63
|
3.0
|
16.3
|
1.0
|
HB
|
B:THR63
|
3.0
|
13.7
|
1.0
|
CB
|
B:THR63
|
3.4
|
11.4
|
1.0
|
K
|
B:K214
|
3.6
|
15.3
|
0.2
|
C
|
B:THR63
|
3.9
|
12.6
|
1.0
|
CA
|
B:THR63
|
4.3
|
10.8
|
1.0
|
HG21
|
B:THR63
|
4.5
|
21.4
|
1.0
|
CG2
|
B:THR63
|
4.6
|
17.8
|
1.0
|
HA
|
B:VAL64
|
4.6
|
14.4
|
1.0
|
K
|
B:K216
|
4.8
|
62.9
|
0.2
|
HA
|
B:THR63
|
4.8
|
13.0
|
1.0
|
N
|
B:VAL64
|
4.9
|
13.6
|
1.0
|
O
|
B:THR62
|
5.0
|
17.3
|
1.0
|
|
Reference:
B.Lee,
K.I.White,
M.A.Socolich,
M.A.Klureza,
R.Henning,
V.Srajer,
R.Ranganathan,
D.Hekstra.
Direct Visualization of Electric Field-Stimulated Ion Conduction in A Potassium Channel To Be Published.
Page generated: Mon Aug 12 23:03:15 2024
|