Potassium in PDB 8caz: Empty 30S Head

The structure of Empty 30S Head also contains other interesting chemical elements:

Magnesium

(Mg)

29 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Potassium atom in the Empty 30S Head (pdb code 8caz). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 13 binding sites of Potassium where determined in the Empty 30S Head, PDB code: 8caz:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 13 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Empty 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1601 b:37.9 occ:1.00 O A:HOH1713 2.6 40.8 1.0 O4 A:U1358 2.6 26.3 1.0 O6 A:G976 2.8 28.1 1.0 O2 A:C1359 2.8 27.6 1.0 O A:HOH1822 2.9 35.2 1.0 C4 A:U1358 3.3 23.1 1.0 C2 A:C1359 3.6 22.8 1.0 C6 A:G976 3.7 23.9 1.0 C5 A:U1358 3.8 24.3 1.0 N3 A:C1359 3.8 23.3 1.0 O A:HOH1864 4.2 16.9 1.0 O A:HOH1805 4.2 42.5 1.0 N1 A:G976 4.4 23.4 1.0 N3 A:U1358 4.4 23.3 1.0 C5 A:G976 4.7 25.2 1.0 N1 A:C1359 4.8 22.9 1.0 C2 A:A1363 4.9 22.9 1.0 OP2 A:A1362 4.9 30.8 1.0

Potassium binding site 2 out of 13 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Empty 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1602 b:29.3 occ:1.00 O6 A:G971 2.6 23.9 1.0 O2' A:U1364 2.9 31.3 1.0 O2 A:U1364 2.9 27.2 1.0 O2' A:G1233 3.0 26.2 1.0 N3 A:A949 3.0 20.3 1.0 N7 A:G971 3.1 22.6 1.0 N3 A:G1233 3.1 22.6 1.0 C6 A:G971 3.3 22.3 1.0 C2' A:G1233 3.5 24.1 1.0 C5 A:G971 3.5 22.6 1.0 C2 A:A949 3.5 18.6 1.0 C1' A:G1233 3.7 23.7 1.0 N2 A:G1233 3.8 19.5 1.0 C2 A:U1364 3.8 27.0 1.0 C2 A:G1233 3.9 20.6 1.0 C2' A:U1364 3.9 30.5 1.0 C1' A:U1364 4.0 29.3 1.0 O4' A:C1234 4.0 23.5 1.0 C4 A:G1233 4.0 22.8 1.0 C4 A:A949 4.1 19.6 1.0 C5' A:G1365 4.1 23.0 1.0 O3' A:U1364 4.1 27.8 1.0 N9 A:G1233 4.3 23.6 1.0 C8 A:G971 4.3 21.9 1.0 N1 A:U1364 4.4 29.4 1.0 C1' A:A949 4.4 19.9 1.0 O2' A:A949 4.6 21.8 1.0 N9 A:A949 4.6 19.9 1.0 N1 A:G971 4.6 21.2 1.0 C3' A:U1364 4.7 28.7 1.0 C1' A:C1234 4.7 23.1 1.0 N1 A:A949 4.7 18.6 1.0 C4 A:G971 4.8 21.8 1.0 C2' A:A949 4.8 20.5 1.0 N3 A:U1364 4.9 28.0 1.0 O4' A:G1233 4.9 23.4 1.0 O5' A:G1365 5.0 25.1 1.0 C3' A:G1233 5.0 23.9 1.0

Potassium binding site 3 out of 13 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Empty 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1603 b:36.0 occ:1.00 O4 A:U1073 2.6 32.1 1.0 O4 A:U1083 2.7 26.4 1.0 O6 A:G1074 2.8 29.0 1.0 O A:HOH2097 2.9 36.0 1.0 C4 A:U1073 3.5 31.0 1.0 N2 A:G1084 3.6 24.6 1.0 C4 A:U1083 3.6 25.5 1.0 N6 A:A1082 3.6 26.9 1.0 N3 A:U1083 3.8 24.5 1.0 C6 A:G1074 3.9 27.3 1.0 C5 A:U1073 4.0 31.0 1.0 C2 A:G1084 4.2 22.7 1.0 O A:HOH1911 4.3 30.2 1.0 N6 A:A1102 4.3 27.2 1.0 N7 A:G1074 4.3 28.8 1.0 N1 A:G1084 4.5 23.1 1.0 C5 A:G1074 4.5 27.6 1.0 C6 A:A1082 4.6 27.0 1.0 O4 A:U1075 4.7 32.2 1.0 N3 A:U1073 4.7 32.2 1.0 N7 A:G1072 4.8 28.7 1.0 N3 A:G1084 5.0 23.6 1.0 N1 A:G1074 5.0 26.1 1.0

Potassium binding site 4 out of 13 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Empty 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1604 b:31.5 occ:1.00 O6 A:G1206 2.6 27.7 1.0 O4 A:U1052 2.6 29.6 1.0 O2 A:C1200 2.6 24.8 1.0 O A:HOH2051 2.8 30.5 1.0 O A:HOH1943 2.9 38.2 1.0 O6 A:2MG1207 3.0 29.9 1.0 O A:HOH1799 3.4 64.6 1.0 C2 A:C1200 3.5 23.2 1.0 C4 A:U1052 3.6 28.1 1.0 N4 A:C1051 3.6 30.4 1.0 N3 A:U1205 3.6 23.1 1.0 C6 A:G1206 3.6 26.4 1.0 C6 A:2MG1207 3.8 29.3 1.0 N3 A:U1052 3.8 27.4 1.0 O4 A:U1205 3.8 26.3 1.0 N7 A:G1206 3.8 26.8 1.0 C4 A:U1205 3.9 23.8 1.0 N3 A:C1200 4.0 23.0 1.0 C5 A:G1206 4.1 26.5 1.0 O2' A:C1200 4.2 25.6 1.0 N6 A:A1055 4.4 24.3 1.0 C2 A:U1205 4.4 23.9 1.0 N1 A:C1200 4.4 25.0 1.0 N1 A:2MG1207 4.4 29.6 1.0 O A:HOH1856 4.5 45.2 1.0 C5 A:2MG1207 4.5 29.1 1.0 C1' A:C1200 4.6 24.8 1.0 C4 A:C1051 4.6 31.3 1.0 O2 A:U1205 4.7 23.5 1.0 N3 A:C1051 4.9 32.1 1.0 N7 A:2MG1207 4.9 29.1 1.0 N1 A:G1206 4.9 26.2 1.0 C5 A:U1205 4.9 23.7 1.0 C5 A:U1052 4.9 28.3 1.0

Potassium binding site 5 out of 13 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Empty 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1605 b:28.4 occ:1.00 O2' A:C1322 2.6 21.6 1.0 O2 A:C1322 2.9 22.3 1.0 O2' A:A1319 2.9 25.9 1.0 N3 A:A1319 3.0 20.6 1.0 O A:HOH2099 3.3 21.0 1.0 O3' A:C1322 3.4 24.9 1.0 C2' A:C1322 3.6 23.2 1.0 C1' A:C1322 3.7 22.4 1.0 C2 A:A1319 3.7 19.3 1.0 O A:HOH1769 3.9 34.5 1.0 C2 A:C1322 3.9 21.4 1.0 C1' A:A1319 3.9 22.4 1.0 O4' A:G1323 4.0 23.0 1.0 C4 A:A1319 4.0 20.0 1.0 C2' A:A1319 4.0 24.3 1.0 O5' A:G1323 4.1 24.5 1.0 C8 A:G1323 4.2 20.9 1.0 C3' A:C1322 4.2 23.6 1.0 N1 A:C1322 4.3 22.4 1.0 C5' A:G1323 4.3 23.4 1.0 N9 A:A1319 4.4 20.6 1.0 O4' A:A978 4.4 16.2 1.0 P A:G1323 4.4 25.9 1.0 C1' A:A978 4.5 16.5 1.0 N3 A:A978 4.5 17.0 1.0 O A:HOH1843 4.5 25.4 1.0 OP2 A:U1321 4.5 23.8 1.0 OP2 A:G1323 4.7 27.6 1.0 C4' A:G1323 4.8 23.4 1.0 C4 A:A978 4.8 16.2 1.0 N7 A:G1323 4.8 20.8 1.0 N9 A:G1323 4.8 21.0 1.0 O3' A:A1319 4.8 27.9 1.0 N9 A:A978 4.9 16.2 1.0 O4' A:C1322 4.9 23.6 1.0 C5 A:U1321 4.9 24.7 1.0 C1' A:G1323 5.0 22.0 1.0

Potassium binding site 6 out of 13 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Empty 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1606 b:38.7 occ:1.00 OP2 A:C1303 2.6 28.1 1.0 O6 A:G1304 2.7 29.6 1.0 O6 A:G1305 2.8 30.3 1.0 O A:HOH1812 3.0 28.2 1.0 N7 A:G1304 3.0 23.8 1.0 C6 A:G1304 3.5 24.0 1.0 O A:HOH1768 3.5 47.0 1.0 C5 A:G1304 3.5 22.8 1.0 C6 A:G1305 3.7 26.4 1.0 C5 A:C1303 3.8 20.1 1.0 P A:C1303 3.9 26.6 1.0 N1 A:G1305 4.1 25.9 1.0 C8 A:G1304 4.2 22.8 1.0 C6 A:C1303 4.3 21.3 1.0 O5' A:C1303 4.4 25.7 1.0 C4 A:C1303 4.6 20.5 1.0 OP1 A:C1303 4.7 27.1 1.0 C5 A:G1305 4.8 27.3 1.0 N4 A:C1303 4.8 20.2 1.0 N1 A:G1304 4.8 23.3 1.0 OP2 A:U1301 4.8 37.5 1.0 MG A:MG1629 4.9 27.5 1.0 C4 A:G1304 4.9 22.6 1.0

Potassium binding site 7 out of 13 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Empty 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1607 b:40.4 occ:1.00 N7 A:G1233 2.8 23.1 1.0 O A:HOH1831 2.8 36.4 1.0 O A:HOH2101 2.9 29.3 1.0 OP1 A:G944 2.9 25.1 1.0 O A:HOH1995 3.2 42.7 1.0 O3' A:U943 3.3 23.3 1.0 O4 A:U1232 3.5 21.5 1.0 O6 A:G1233 3.6 22.2 1.0 P A:G944 3.7 22.3 1.0 O A:HOH1746 3.7 34.7 1.0 C4 A:U1232 3.8 21.5 1.0 C5 A:G1233 3.8 22.6 1.0 C5 A:U1232 3.8 21.4 1.0 C8 A:G1233 3.8 22.7 1.0 O A:HOH1789 3.9 30.8 1.0 O A:HOH2154 3.9 30.4 1.0 O A:HOH2192 4.0 27.0 1.0 C6 A:G1233 4.1 21.4 1.0 MG A:MG1608 4.3 29.0 1.0 C3' A:U943 4.6 23.1 1.0 C6 A:U1232 4.7 22.2 1.0 N3 A:U1232 4.7 22.3 1.0 C5' A:G944 4.7 25.4 1.0 O5' A:G944 4.7 25.1 1.0 O2' A:U943 4.8 25.7 1.0 OP2 A:G944 4.8 26.3 1.0 N4 A:C1234 4.9 19.0 1.0

Potassium binding site 8 out of 13 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Empty 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1637 b:36.1 occ:1.00 N7 A:G945 2.8 30.1 1.0 O6 A:G945 2.9 28.6 1.0 OP2 A:U943 2.9 27.5 1.0 OP2 A:G944 3.0 26.3 1.0 N7 A:G944 3.0 26.2 1.0 N7 A:G1337 3.1 31.6 1.0 C8 A:G1337 3.5 29.9 1.0 C5 A:G945 3.5 28.8 1.0 C6 A:G945 3.5 27.3 1.0 C8 A:G944 3.5 25.5 1.0 O A:HOH1760 3.8 24.8 1.0 P A:U943 3.8 24.3 1.0 O5' A:U943 3.9 25.3 1.0 C5 A:G1337 3.9 29.9 1.0 C8 A:G945 4.0 30.2 1.0 C5 A:G944 4.3 28.1 1.0 OP1 A:U943 4.3 26.8 1.0 N9 A:G1337 4.3 31.2 1.0 P A:G944 4.4 22.3 1.0 C5 A:U943 4.4 23.4 1.0 C6 A:U943 4.4 23.4 1.0 O A:HOH1858 4.5 27.7 1.0 O5' A:G944 4.5 25.1 1.0 C3' A:U943 4.6 23.1 1.0 C4 A:G1337 4.6 29.1 1.0 C6 A:G1337 4.6 27.5 1.0 O6 A:G1337 4.7 29.0 1.0 C4 A:G945 4.8 28.5 1.0 O6 A:G944 4.8 31.2 1.0 N1 A:G945 4.9 26.4 1.0 N9 A:G944 4.9 26.1 1.0 O3' A:U943 4.9 23.3 1.0 C6 A:G944 5.0 28.4 1.0

Potassium binding site 9 out of 13 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Empty 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1638 b:32.1 occ:1.00 O2' A:U1224 2.8 24.2 1.0 OP2 A:C1322 2.9 25.0 1.0 O3' A:U1224 2.9 25.2 1.0 OP1 A:A1225 3.0 28.6 1.0 O M:GLN100 3.0 24.8 1.0 P A:A1225 3.6 24.5 1.0 O M:GLY99 3.6 32.5 1.0 C5' A:A1225 3.8 23.9 1.0 C M:GLN100 3.8 24.5 1.0 C2' A:U1224 3.8 24.7 1.0 C3' A:U1224 4.0 23.9 1.0 P A:C1322 4.1 20.4 1.0 C M:GLY99 4.1 28.7 1.0 CA M:ARG101 4.2 26.5 1.0 C1' A:U1224 4.2 23.8 1.0 O5' A:A1225 4.2 23.8 1.0 C5' A:C1322 4.2 21.9 1.0 N M:ARG101 4.3 24.4 1.0 OP1 A:C1322 4.4 22.3 1.0 N M:GLN100 4.6 27.3 1.0 O5' A:C1322 4.7 20.9 1.0 CA M:GLY99 4.7 28.1 1.0 O2 A:U1224 4.7 27.2 1.0 CA M:GLN100 4.8 26.5 1.0 N M:THR102 4.8 25.3 1.0 OP2 A:A1225 4.9 23.6 1.0 C M:ARG101 4.9 25.4 1.0

Potassium binding site 10 out of 13 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Empty 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1639 b:26.3 occ:1.00 OP1 A:C979 2.6 18.8 1.0 O A:HOH1752 2.8 25.5 1.0 N7 A:G1222 2.8 17.9 1.0 O A:HOH2092 2.9 24.6 1.0 O A:HOH1886 3.0 22.4 1.0 N4 A:C1322 3.0 20.8 1.0 O3' A:A978 3.4 17.0 1.0 P A:C979 3.6 16.1 1.0 C5' A:C979 3.7 17.4 1.0 C8 A:G1222 3.7 16.3 1.0 C5 A:G1222 3.8 17.6 1.0 O6 A:G1222 3.8 18.2 1.0 MG A:MG1625 3.9 15.3 1.0 O A:HOH2036 4.0 18.2 1.0 C4 A:C1322 4.0 21.4 1.0 O A:HOH2093 4.1 21.5 1.0 OP2 A:G1222 4.1 18.6 1.0 O5' A:C979 4.2 16.6 1.0 C6 A:G1222 4.2 17.2 1.0 N4 A:C1223 4.2 16.9 1.0 N7 A:G1221 4.3 17.6 1.0 O2' A:A978 4.4 17.3 1.0 N3 A:C1322 4.6 21.4 1.0 C5 A:G1221 4.7 17.7 1.0 C3' A:A978 4.7 17.1 1.0 C5 A:C1223 4.8 17.6 1.0 C8 A:G1221 4.8 17.4 1.0 OP2 A:G1221 4.8 19.2 1.0 OP2 A:C979 4.9 16.5 1.0 C4 A:C1223 4.9 17.5 1.0 N9 A:G1222 4.9 16.7 1.0 C5 A:C1322 5.0 22.0 1.0 O6 A:G1221 5.0 17.4 1.0 C4 A:G1222 5.0 17.8 1.0 OP2 A:C980 5.0 16.4 1.0

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.