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Potassium in PDB 9es5: Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex

Enzymatic activity of Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex

All present enzymatic activity of Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex:
3.6.4.9;

Other elements in 9es5:

The structure of Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms
Fluorine (F) 21 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex (pdb code 9es5). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex, PDB code: 9es5:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 9es5

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Potassium binding site 1 out of 7 in the Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K604

b:45.8
occ:1.00
O A:THR30 2.7 35.5 1.0
O A:LYS51 2.7 35.9 1.0
OG1 A:THR90 2.8 35.4 1.0
F2 A:BEF602 2.9 49.0 1.0
O1A A:ADP601 3.2 58.3 1.0
OG1 A:THR30 3.4 35.5 1.0
O3A A:ADP601 3.6 58.3 1.0
N A:GLY53 3.7 34.1 1.0
O1B A:ADP601 3.7 58.3 1.0
C A:THR30 3.8 35.5 1.0
C A:LYS51 3.9 35.9 1.0
CB A:THR30 3.9 35.5 1.0
PA A:ADP601 3.9 58.3 1.0
CB A:THR90 4.0 35.4 1.0
BE A:BEF602 4.2 49.0 1.0
PB A:ADP601 4.2 58.3 1.0
C A:ASP52 4.2 40.2 1.0
CA A:ASP52 4.3 40.2 1.0
CA A:GLY53 4.4 34.1 1.0
F1 A:BEF602 4.4 49.0 1.0
CA A:THR30 4.5 35.5 1.0
N A:ASP52 4.5 40.2 1.0
O2B A:ADP601 4.5 58.3 1.0
NZ A:LYS51 4.7 35.9 1.0
O2A A:ADP601 4.7 58.3 1.0
CG2 A:THR90 4.7 35.4 1.0
N A:MET31 4.8 33.5 1.0
CG A:LYS51 4.8 35.9 1.0
CA A:MET31 5.0 33.5 1.0

Potassium binding site 2 out of 7 in 9es5

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Potassium binding site 2 out of 7 in the Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K604

b:42.4
occ:1.00
O B:THR30 2.7 34.0 1.0
F2 B:BEF602 2.7 41.6 1.0
O B:LYS51 2.7 33.3 1.0
O1A B:ADP601 3.0 38.9 1.0
OG1 B:THR90 3.1 31.4 1.0
OG1 B:THR30 3.6 34.0 1.0
O3A B:ADP601 3.6 38.9 1.0
O1B B:ADP601 3.7 38.9 1.0
PA B:ADP601 3.8 38.9 1.0
C B:THR30 3.8 34.0 1.0
N B:GLY53 3.9 31.7 1.0
C B:LYS51 3.9 33.3 1.0
CB B:THR30 4.0 34.0 1.0
BE B:BEF602 4.0 41.6 1.0
CB B:THR90 4.2 31.4 1.0
PB B:ADP601 4.3 38.9 1.0
F1 B:BEF602 4.3 41.6 1.0
CA B:ASP52 4.4 38.0 1.0
C B:ASP52 4.4 38.0 1.0
O2A B:ADP601 4.5 38.9 1.0
NZ B:LYS51 4.6 33.3 1.0
CA B:GLY53 4.6 31.7 1.0
CA B:THR30 4.6 34.0 1.0
N B:ASP52 4.6 38.0 1.0
O2B B:ADP601 4.7 38.9 1.0
CG B:LYS51 4.8 33.3 1.0
N B:MET31 4.8 30.4 1.0
F3 B:BEF602 4.8 41.6 1.0
CG2 B:THR90 4.9 31.4 1.0
CA B:MET31 5.0 30.4 1.0

Potassium binding site 3 out of 7 in 9es5

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Potassium binding site 3 out of 7 in the Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K604

b:45.2
occ:1.00
O C:THR30 2.7 34.8 1.0
O C:LYS51 2.7 36.4 1.0
OG1 C:THR90 2.9 35.1 1.0
F2 C:BEF602 3.0 49.7 1.0
O1A C:ADP601 3.2 58.3 1.0
OG1 C:THR30 3.4 34.8 1.0
O3A C:ADP601 3.6 58.3 1.0
O1B C:ADP601 3.7 58.3 1.0
N C:GLY53 3.7 33.7 1.0
C C:THR30 3.8 34.8 1.0
C C:LYS51 3.8 36.4 1.0
CB C:THR30 3.9 34.8 1.0
PA C:ADP601 3.9 58.3 1.0
CB C:THR90 4.1 35.1 1.0
CA C:ASP52 4.2 39.8 1.0
PB C:ADP601 4.3 58.3 1.0
C C:ASP52 4.3 39.8 1.0
BE C:BEF602 4.3 49.7 1.0
F1 C:BEF602 4.4 49.7 1.0
CA C:GLY53 4.4 33.7 1.0
N C:ASP52 4.5 39.8 1.0
CA C:THR30 4.5 34.8 1.0
O2B C:ADP601 4.6 58.3 1.0
NZ C:LYS51 4.7 36.4 1.0
O2A C:ADP601 4.7 58.3 1.0
CG C:LYS51 4.8 36.4 1.0
N C:MET31 4.8 35.4 1.0
CG2 C:THR90 4.8 35.1 1.0
CA C:LYS51 5.0 36.4 1.0
CA C:MET31 5.0 35.4 1.0
OG1 C:THR89 5.0 34.1 1.0

Potassium binding site 4 out of 7 in 9es5

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Potassium binding site 4 out of 7 in the Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K604

b:48.1
occ:1.00
O D:THR30 2.7 37.4 1.0
F2 D:BEF602 2.7 50.0 1.0
O D:LYS51 2.7 37.5 1.0
O1A D:ADP601 3.0 58.3 1.0
OG1 D:THR90 3.0 37.0 1.0
OG1 D:THR30 3.5 37.4 1.0
O3A D:ADP601 3.6 58.3 1.0
O1B D:ADP601 3.7 58.3 1.0
PA D:ADP601 3.8 58.3 1.0
C D:THR30 3.8 37.4 1.0
N D:GLY53 3.9 32.8 1.0
C D:LYS51 3.9 37.5 1.0
CB D:THR30 4.0 37.4 1.0
BE D:BEF602 4.1 50.0 1.0
CB D:THR90 4.1 37.0 1.0
PB D:ADP601 4.2 58.3 1.0
CA D:ASP52 4.4 39.9 1.0
F1 D:BEF602 4.4 50.0 1.0
C D:ASP52 4.4 39.9 1.0
NZ D:LYS51 4.5 37.5 1.0
CA D:GLY53 4.5 32.8 1.0
O2A D:ADP601 4.5 58.3 1.0
CA D:THR30 4.6 37.4 1.0
N D:ASP52 4.6 39.9 1.0
O2B D:ADP601 4.6 58.3 1.0
CG D:LYS51 4.8 37.5 1.0
N D:MET31 4.8 35.1 1.0
CG2 D:THR90 4.9 37.0 1.0
F3 D:BEF602 5.0 50.0 1.0

Potassium binding site 5 out of 7 in 9es5

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Potassium binding site 5 out of 7 in the Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K604

b:38.5
occ:1.00
O E:THR30 2.7 32.4 1.0
O E:LYS51 2.7 33.1 1.0
F2 E:BEF602 2.9 39.4 1.0
OG1 E:THR90 3.1 31.2 1.0
O1A E:ADP601 3.1 39.2 1.0
OG1 E:THR30 3.5 32.4 1.0
O3A E:ADP601 3.5 39.2 1.0
O1B E:ADP601 3.8 39.2 1.0
PA E:ADP601 3.8 39.2 1.0
C E:THR30 3.8 32.4 1.0
N E:GLY53 3.8 31.0 1.0
C E:LYS51 3.9 33.1 1.0
CB E:THR30 3.9 32.4 1.0
CB E:THR90 4.2 31.2 1.0
BE E:BEF602 4.2 39.4 1.0
PB E:ADP601 4.2 39.2 1.0
F1 E:BEF602 4.3 39.4 1.0
CA E:ASP52 4.3 36.9 1.0
C E:ASP52 4.3 36.9 1.0
CA E:GLY53 4.5 31.0 1.0
N E:ASP52 4.5 36.9 1.0
CA E:THR30 4.5 32.4 1.0
O2B E:ADP601 4.6 39.2 1.0
O2A E:ADP601 4.6 39.2 1.0
NZ E:LYS51 4.6 33.1 1.0
CG E:LYS51 4.8 33.1 1.0
N E:MET31 4.8 31.4 1.0
CG2 E:THR90 4.9 31.2 1.0
CA E:MET31 5.0 31.4 1.0

Potassium binding site 6 out of 7 in 9es5

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Potassium binding site 6 out of 7 in the Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K604

b:42.6
occ:1.00
O F:THR30 2.7 34.9 1.0
O F:LYS51 2.7 36.2 1.0
F2 F:BEF602 3.0 42.3 1.0
O1A F:ADP601 3.0 41.1 1.0
OG1 F:THR90 3.1 32.1 1.0
O3A F:ADP601 3.5 41.1 1.0
OG1 F:THR30 3.6 34.9 1.0
O1B F:ADP601 3.7 41.1 1.0
PA F:ADP601 3.8 41.1 1.0
C F:THR30 3.8 34.9 1.0
N F:GLY53 3.9 34.2 1.0
C F:LYS51 3.9 36.2 1.0
CB F:THR30 4.0 34.9 1.0
BE F:BEF602 4.2 42.3 1.0
CB F:THR90 4.2 32.1 1.0
PB F:ADP601 4.2 41.1 1.0
F1 F:BEF602 4.3 42.3 1.0
CA F:ASP52 4.3 39.5 1.0
C F:ASP52 4.4 39.5 1.0
O2A F:ADP601 4.5 41.1 1.0
NZ F:LYS51 4.5 36.2 1.0
CA F:GLY53 4.6 34.2 1.0
N F:ASP52 4.6 39.5 1.0
CA F:THR30 4.6 34.9 1.0
O2B F:ADP601 4.6 41.1 1.0
CG F:LYS51 4.8 36.2 1.0
N F:MET31 4.8 29.9 1.0
CG2 F:THR90 4.9 32.1 1.0
F3 F:BEF602 5.0 42.3 1.0
CA F:MET31 5.0 29.9 1.0

Potassium binding site 7 out of 7 in 9es5

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Potassium binding site 7 out of 7 in the Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Adp:BEF3-Bound Human Mitochondrial HSP60-HSP10 Half-Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K604

b:44.9
occ:1.00
O G:THR30 2.7 36.2 1.0
O G:LYS51 2.7 36.3 1.0
F2 G:BEF602 3.0 48.6 1.0
OG1 G:THR90 3.0 35.9 1.0
O1A G:ADP601 3.0 58.3 1.0
O3A G:ADP601 3.5 58.3 1.0
O1B G:ADP601 3.6 58.3 1.0
OG1 G:THR30 3.6 36.2 1.0
PA G:ADP601 3.8 58.3 1.0
C G:THR30 3.8 36.2 1.0
N G:GLY53 3.9 34.4 1.0
C G:LYS51 3.9 36.3 1.0
CB G:THR30 4.0 36.2 1.0
CB G:THR90 4.1 35.9 1.0
PB G:ADP601 4.1 58.3 1.0
BE G:BEF602 4.2 48.6 1.0
F1 G:BEF602 4.2 48.6 1.0
CA G:ASP52 4.4 39.7 1.0
C G:ASP52 4.4 39.7 1.0
O2B G:ADP601 4.5 58.3 1.0
O2A G:ADP601 4.5 58.3 1.0
NZ G:LYS51 4.5 36.3 1.0
CA G:GLY53 4.5 34.4 1.0
CA G:THR30 4.6 36.2 1.0
N G:ASP52 4.6 39.7 1.0
CG G:LYS51 4.8 36.3 1.0
N G:MET31 4.8 33.0 1.0
CG2 G:THR90 4.8 35.9 1.0
CA G:MET31 5.0 33.0 1.0

Reference:

I.Tascon, J.P.Lopez-Alonso, I.Ubarretxena-Belandia, J.Vilchez, Y.Shkolnisky, A.Azem, J.Hirsch. Structural Basis For Atp-Triggered Assembly of Human Mitochondrial HSP60-HSP10 Chaperonin To Be Published.
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