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Potassium in PDB 3wvl: Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli

Enzymatic activity of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli

All present enzymatic activity of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli:
3.6.4.9;

Protein crystallography data

The structure of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli, PDB code: 3wvl was solved by A.Koike-Takeshita, T.Arakawa, H.Taguchi, T.Shimamura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.56 / 3.79
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 160.280, 217.117, 198.481, 90.00, 98.02, 90.00
R / Rfree (%) 21.1 / 25

Other elements in 3wvl:

The structure of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli also contains other interesting chemical elements:

Magnesium (Mg) 14 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Potassium atom in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli (pdb code 3wvl). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 14 binding sites of Potassium where determined in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli, PDB code: 3wvl:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 14 in 3wvl

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Potassium binding site 1 out of 14 in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K603

b:0.4
occ:1.00
 O3A A:ATP601 2.8 1.0 1.0
O A:LYS51 2.8 72.6 1.0
O1G A:ATP601 2.9 78.3 1.0
O1A A:ATP601 3.0 0.2 1.0
O3G A:ATP601 3.1 1.0 1.0
O A:THR30 3.2 0.4 1.0
OG1 A:THR30 3.3 0.1 1.0
PA A:ATP601 3.3 0.1 1.0
PG A:ATP601 3.5 0.0 1.0
NZ A:LYS51 3.5 0.4 1.0
CG A:LYS51 3.7 0.4 1.0
CG2 A:THR90 3.7 69.1 1.0
C A:LYS51 3.8 79.4 1.0
O2A A:ATP601 3.9 0.1 1.0
O3B A:ATP601 3.9 0.5 1.0
OG1 A:THR90 3.9 0.3 1.0
C A:THR30 4.0 0.3 1.0
PB A:ATP601 4.0 89.9 1.0
CB A:THR30 4.1 0.1 1.0
MG A:MG602 4.4 76.2 1.0
CB A:THR90 4.5 0.7 1.0
CE A:LYS51 4.5 94.5 1.0
CB A:LYS51 4.5 0.1 1.0
CD A:LYS51 4.6 0.2 1.0
N A:GLY53 4.6 71.6 1.0
O1B A:ATP601 4.7 74.2 1.0
N A:ALA52 4.7 0.2 1.0
CA A:ALA52 4.7 0.4 1.0
CA A:LYS51 4.7 95.0 1.0
CA A:THR30 4.7 92.0 1.0
N A:LEU31 4.8 75.5 1.0
O5' A:ATP601 4.8 77.6 1.0
CA A:LEU31 4.8 78.6 1.0
O2G A:ATP601 4.9 0.6 1.0

Potassium binding site 2 out of 14 in 3wvl

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Potassium binding site 2 out of 14 in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K603

b:0.5
occ:1.00
 O B:LYS51 2.7 74.7 1.0
O3G B:ATP601 2.8 0.8 1.0
O1G B:ATP601 2.8 0.9 1.0
O3A B:ATP601 2.9 0.7 1.0
PG B:ATP601 3.2 0.7 1.0
O3B B:ATP601 3.6 0.9 1.0
O1A B:ATP601 3.6 1.0 1.0
PA B:ATP601 3.6 0.5 1.0
CG B:LYS51 3.6 0.2 1.0
C B:LYS51 3.7 85.4 1.0
NZ B:LYS51 3.7 0.3 1.0
O B:THR30 3.8 0.6 1.0
PB B:ATP601 3.8 86.6 1.0
O2A B:ATP601 4.0 0.6 1.0
CG2 B:THR30 4.0 60.0 1.0
MG B:MG602 4.2 69.0 1.0
OG1 B:THR30 4.2 94.2 1.0
O1B B:ATP601 4.3 0.1 1.0
CB B:LYS51 4.3 0.6 1.0
CG2 B:THR90 4.4 72.6 1.0
N B:ALA52 4.4 0.9 1.0
CA B:ALA52 4.5 0.2 1.0
N B:GLY53 4.5 61.3 1.0
CD B:LYS51 4.5 0.1 1.0
CA B:LYS51 4.6 0.0 1.0
OG1 B:THR90 4.6 0.1 1.0
CE B:LYS51 4.7 95.7 1.0
O2G B:ATP601 4.7 0.4 1.0
C B:THR30 4.7 97.8 1.0
CB B:THR30 4.7 95.3 1.0
C B:ALA52 5.0 81.2 1.0

Potassium binding site 3 out of 14 in 3wvl

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Potassium binding site 3 out of 14 in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K603

b:0.6
occ:1.00
 O3G C:ATP601 2.8 0.9 1.0
O3A C:ATP601 2.9 0.2 1.0
O1G C:ATP601 3.0 0.4 1.0
O1A C:ATP601 3.2 0.0 1.0
PA C:ATP601 3.3 0.3 1.0
CG C:LYS51 3.3 0.2 1.0
O C:LYS51 3.3 66.9 1.0
O2A C:ATP601 3.4 71.1 1.0
PG C:ATP601 3.4 0.7 1.0
MG C:MG602 3.5 71.8 1.0
O C:THR30 3.7 0.2 1.0
CD C:LYS51 3.9 0.7 1.0
CE C:LYS51 3.9 95.6 1.0
C C:LYS51 4.0 87.2 1.0
CB C:LYS51 4.1 0.3 1.0
PB C:ATP601 4.1 0.3 1.0
O3B C:ATP601 4.1 65.2 1.0
O1B C:ATP601 4.4 0.9 1.0
OG1 C:THR30 4.4 81.9 1.0
CA C:LYS51 4.7 0.1 1.0
N C:ALA52 4.7 0.9 1.0
C C:THR30 4.7 0.3 1.0
O2G C:ATP601 4.8 0.7 1.0
O5' C:ATP601 4.8 0.3 1.0
CA C:ALA52 4.9 0.1 1.0
CB C:THR30 5.0 89.9 1.0

Potassium binding site 4 out of 14 in 3wvl

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Potassium binding site 4 out of 14 in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K603

b:0.8
occ:1.00
 O1G D:ATP601 2.6 0.7 1.0
N D:GLY53 2.7 78.2 1.0
O D:LYS51 2.9 71.0 1.0
CG2 D:THR90 3.0 68.7 1.0
O3B D:ATP601 3.2 69.0 1.0
PG D:ATP601 3.2 0.7 1.0
CA D:GLY53 3.3 88.4 1.0
OG1 D:THR30 3.4 77.0 1.0
O2G D:ATP601 3.4 1.0 1.0
CG2 D:THR89 3.6 67.7 1.0
C D:ALA52 3.7 93.8 1.0
CA D:ALA52 3.8 0.1 1.0
OG1 D:THR90 3.8 0.5 1.0
C D:LYS51 4.0 77.0 1.0
CB D:THR90 4.0 0.3 1.0
O3A D:ATP601 4.0 97.3 1.0
N D:THR90 4.2 0.6 1.0
PB D:ATP601 4.2 78.2 1.0
N D:ALA52 4.4 0.7 1.0
OG1 D:THR89 4.5 71.7 1.0
O2B D:ATP601 4.6 68.0 1.0
CA D:THR90 4.6 98.1 1.0
C D:GLY53 4.6 85.0 1.0
CB D:THR30 4.7 0.2 1.0
CB D:THR89 4.7 90.4 1.0
O3G D:ATP601 4.7 0.3 1.0
O D:ALA52 4.8 0.4 1.0
N D:VAL54 4.9 71.6 1.0

Potassium binding site 5 out of 14 in 3wvl

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Potassium binding site 5 out of 14 in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K603

b:0.4
occ:1.00
 O E:THR30 2.8 0.1 1.0
ND2 E:ASN153 3.0 0.5 1.0
CB E:LYS51 3.1 0.9 1.0
O1A E:ATP601 3.1 0.6 1.0
OD1 E:ASN153 3.2 0.5 1.0
CG E:ASN153 3.4 0.4 1.0
CG E:LYS51 3.6 0.3 1.0
C E:THR30 3.9 0.2 1.0
O E:LYS51 4.0 66.8 1.0
PA E:ATP601 4.0 0.8 1.0
O2A E:ATP601 4.1 0.0 1.0
CA E:LYS51 4.2 0.6 1.0
CB E:THR30 4.3 0.6 1.0
OG1 E:THR30 4.3 76.4 1.0
C E:LYS51 4.4 91.1 1.0
CD E:LYS51 4.5 0.3 1.0
CA E:THR30 4.6 0.3 1.0
O E:GLY32 4.6 0.7 1.0
O3A E:ATP601 4.6 0.3 1.0
CB E:ASN153 4.8 0.3 1.0
O3G E:ATP601 4.9 0.8 1.0

Potassium binding site 6 out of 14 in 3wvl

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Potassium binding site 6 out of 14 in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K603

b:0.6
occ:1.00
 O1G F:ATP601 2.8 89.5 1.0
O3A F:ATP601 2.9 0.1 1.0
O F:LYS51 2.9 74.8 1.0
CG2 F:THR30 3.2 63.7 1.0
O F:THR30 3.2 0.2 1.0
OG1 F:THR90 3.4 0.3 1.0
O3G F:ATP601 3.4 0.8 1.0
CG2 F:THR90 3.4 61.8 1.0
O1A F:ATP601 3.4 91.0 1.0
PG F:ATP601 3.5 1.0 1.0
O3B F:ATP601 3.6 87.1 1.0
PA F:ATP601 3.7 0.8 1.0
C F:THR30 3.9 0.0 1.0
CB F:THR90 4.0 97.5 1.0
PB F:ATP601 4.0 76.6 1.0
OG1 F:THR30 4.0 0.1 1.0
CG F:LYS51 4.0 0.5 1.0
C F:LYS51 4.0 83.9 1.0
CB F:THR30 4.1 95.6 1.0
N F:GLY53 4.4 62.2 1.0
O2A F:ATP601 4.4 0.9 1.0
CA F:LEU31 4.5 0.7 1.0
N F:LEU31 4.5 83.2 1.0
MG F:MG602 4.6 77.9 1.0
CA F:THR30 4.7 0.8 1.0
CE F:LYS51 4.7 96.6 1.0
O1B F:ATP601 4.8 82.5 1.0
CA F:ALA52 4.9 0.1 1.0
N F:ALA52 4.9 0.5 1.0
CB F:LYS51 4.9 0.8 1.0
CA F:LYS51 4.9 0.1 1.0
O2G F:ATP601 5.0 0.1 1.0
O2B F:ATP601 5.0 0.9 1.0
CD F:LYS51 5.0 0.9 1.0

Potassium binding site 7 out of 14 in 3wvl

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Potassium binding site 7 out of 14 in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K603

b:0.8
occ:1.00
 O3G G:ATP601 2.8 0.9 1.0
O3A G:ATP601 2.9 100.0 1.0
O G:LYS51 2.9 79.1 1.0
O1G G:ATP601 2.9 0.7 1.0
O1A G:ATP601 3.2 0.6 1.0
CG G:LYS51 3.2 0.6 1.0
PA G:ATP601 3.3 0.3 1.0
PG G:ATP601 3.4 0.8 1.0
NZ G:LYS51 3.6 0.3 1.0
O G:THR30 3.6 0.0 1.0
O2A G:ATP601 3.7 0.7 1.0
OG1 G:THR30 3.7 80.2 1.0
C G:LYS51 3.8 86.5 1.0
O3B G:ATP601 4.0 69.8 1.0
PB G:ATP601 4.1 90.8 1.0
CB G:LYS51 4.2 0.2 1.0
CD G:LYS51 4.2 0.8 1.0
MG G:MG602 4.3 88.2 1.0
CG2 G:THR90 4.3 65.2 1.0
CB G:THR30 4.4 0.1 1.0
CE G:LYS51 4.5 99.2 1.0
C G:THR30 4.5 0.1 1.0
CA G:LYS51 4.6 98.2 1.0
O1B G:ATP601 4.6 87.4 1.0
OG1 G:THR90 4.6 0.8 1.0
N G:ALA52 4.7 0.2 1.0
O2G G:ATP601 4.8 0.4 1.0
N G:GLY53 4.8 59.9 1.0
CA G:ALA52 4.9 0.8 1.0
O5' G:ATP601 4.9 69.0 1.0

Potassium binding site 8 out of 14 in 3wvl

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Potassium binding site 8 out of 14 in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K603

b:0.2
occ:1.00
 O3A H:ATP601 2.8 0.3 1.0
O1G H:ATP601 2.8 86.9 1.0
O3G H:ATP601 2.9 91.8 1.0
O H:LYS51 3.0 85.2 1.0
O H:THR30 3.0 0.4 1.0
O1A H:ATP601 3.1 0.7 1.0
OG1 H:THR30 3.2 91.2 1.0
PG H:ATP601 3.3 0.4 1.0
PA H:ATP601 3.5 0.7 1.0
CG2 H:THR90 3.6 63.3 1.0
O3B H:ATP601 3.7 98.0 1.0
NZ H:LYS51 3.7 0.1 1.0
OG1 H:THR90 3.7 0.4 1.0
C H:THR30 3.8 0.7 1.0
CG H:LYS51 3.9 0.8 1.0
PB H:ATP601 3.9 85.7 1.0
CB H:THR30 4.0 89.4 1.0
C H:LYS51 4.0 83.5 1.0
O2A H:ATP601 4.1 0.9 1.0
CB H:THR90 4.3 0.6 1.0
N H:LEU31 4.6 74.6 1.0
CA H:THR30 4.6 97.9 1.0
N H:GLY53 4.6 61.8 1.0
CA H:LEU31 4.6 76.1 1.0
O1B H:ATP601 4.7 67.8 1.0
CE H:LYS51 4.7 0.1 1.0
CB H:LYS51 4.7 0.5 1.0
O2G H:ATP601 4.8 0.5 1.0
CD H:LYS51 4.8 0.3 1.0
MG H:MG602 4.8 74.5 1.0
O5' H:ATP601 4.9 67.4 1.0
N H:ALA52 4.9 0.4 1.0
CA H:ALA52 4.9 0.4 1.0
CA H:LYS51 4.9 0.8 1.0
O2B H:ATP601 5.0 76.8 1.0

Potassium binding site 9 out of 14 in 3wvl

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Potassium binding site 9 out of 14 in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K603

b:0.5
occ:1.00
 O I:LYS51 2.7 68.2 1.0
O1G I:ATP601 2.8 0.5 1.0
CG2 I:THR30 3.2 58.4 1.0
O1A I:ATP601 3.2 0.8 1.0
O I:THR30 3.2 0.6 1.0
O3A I:ATP601 3.3 0.8 1.0
O3G I:ATP601 3.4 0.1 1.0
CG2 I:THR90 3.6 60.1 1.0
PG I:ATP601 3.6 0.5 1.0
OG1 I:THR30 3.6 0.2 1.0
NZ I:LYS51 3.8 0.5 1.0
PA I:ATP601 3.8 0.1 1.0
CG I:LYS51 3.8 99.9 1.0
C I:LYS51 3.8 82.6 1.0
OG1 I:THR90 3.9 0.9 1.0
CB I:THR30 4.0 0.6 1.0
C I:THR30 4.0 0.7 1.0
O3B I:ATP601 4.1 58.1 1.0
N I:GLY53 4.2 55.6 1.0
CB I:THR90 4.4 0.1 1.0
O2A I:ATP601 4.5 0.4 1.0
PB I:ATP601 4.5 0.3 1.0
MG I:MG602 4.6 0.9 1.0
CA I:THR30 4.6 0.9 1.0
CB I:LYS51 4.7 0.3 1.0
CA I:ALA52 4.7 0.7 1.0
N I:ALA52 4.7 0.3 1.0
CE I:LYS51 4.7 94.6 1.0
CA I:LYS51 4.7 99.5 1.0
N I:LEU31 4.8 86.1 1.0
CD I:LYS51 4.8 0.0 1.0
C I:ALA52 4.9 75.3 1.0
CA I:LEU31 4.9 83.0 1.0
CA I:GLY53 4.9 0.5 1.0
O2G I:ATP601 5.0 0.7 1.0

Potassium binding site 10 out of 14 in 3wvl

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Potassium binding site 10 out of 14 in the Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of the Football-Shaped Groel-Groes Complex (Groel: GROES2:ATP14) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
J:K603

b:0.6
occ:1.00
 O3A J:ATP601 2.9 0.1 1.0
O1G J:ATP601 2.9 0.9 1.0
O1A J:ATP601 2.9 0.0 1.0
O J:LYS51 3.0 67.9 1.0
O3G J:ATP601 3.0 0.4 1.0
PA J:ATP601 3.2 0.4 1.0
CG J:LYS51 3.3 98.2 1.0
PG J:ATP601 3.4 0.1 1.0
O2A J:ATP601 3.6 0.2 1.0
O J:THR30 3.7 0.8 1.0
C J:LYS51 3.8 82.8 1.0
OG1 J:THR30 3.9 89.5 1.0
CE J:LYS51 4.1 99.0 1.0
CD J:LYS51 4.1 0.1 1.0
O3B J:ATP601 4.1 0.9 1.0
PB J:ATP601 4.1 0.1 1.0
CB J:LYS51 4.1 0.2 1.0
MG J:MG602 4.4 1.0 1.0
CG2 J:THR90 4.5 66.5 1.0
CA J:LYS51 4.6 0.1 1.0
OG1 J:THR90 4.6 0.4 1.0
N J:ALA52 4.6 0.8 1.0
CB J:THR30 4.6 82.7 1.0
O1B J:ATP601 4.6 92.1 1.0
C J:THR30 4.6 0.9 1.0
CA J:ALA52 4.7 0.8 1.0
O5' J:ATP601 4.8 0.9 1.0
O2G J:ATP601 4.8 0.4 1.0
N J:GLY53 4.9 67.2 1.0

Reference:

A.Koike-Takeshita, T.Arakawa, H.Taguchi, T.Shimamura. Crystal Structure of A Symmetric Football-Shaped Groel:GROES2 Complex Determined at 3.8 Angstrom Reveals Rearrangement Between Two Groel Rings. J.Mol.Biol. 2014.
ISSN: ESSN 1089-8638
PubMed: 25174333
DOI: 10.1016/J.JMB.2014.08.017
Page generated: Mon Aug 12 09:54:21 2024

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