Potassium in PDB 3w8j: Crystal Structure of P5 A0 in A Complex with PRX4 C-Term

All present enzymatic activity of Crystal Structure of P5 A0 in A Complex with PRX4 C-Term:
1.11.1.15; 5.3.4.1;

The structure of Crystal Structure of P5 A0 in A Complex with PRX4 C-Term, PDB code: 3w8j was solved by K.Inaba, M.Suzuki, R.Kojima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.67 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.045, 53.375, 133.353, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 24.5

The binding sites of Potassium atom in the Crystal Structure of P5 A0 in A Complex with PRX4 C-Term (pdb code 3w8j). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of P5 A0 in A Complex with PRX4 C-Term, PDB code: 3w8j:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in the Crystal Structure of P5 A0 in A Complex with PRX4 C-Term


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of P5 A0 in A Complex with PRX4 C-Term within 5.0Å range: probe atom residue distance (Å) B Occ A:K201 b:83.8 occ:1.00 OE2 A:GLU49 2.7 35.9 1.0 O A:ALA58 2.7 33.7 1.0 OH A:TYR21 2.7 30.8 1.0 OG1 A:THR62 2.8 32.3 1.0 OE1 A:GLU49 3.2 31.7 1.0 CD A:GLU49 3.3 35.1 1.0 N A:THR62 3.5 34.2 1.0 CA A:THR62 3.6 31.4 1.0 CZ A:TYR21 3.6 37.6 1.0 C A:ALA58 3.6 33.8 1.0 CB A:THR62 3.7 32.5 1.0 CD1 A:LEU20 3.8 54.7 1.0 CE2 A:TYR21 4.0 39.5 1.0 CA A:ALA58 4.2 35.6 1.0 CB A:ALA58 4.3 36.4 1.0 C A:LEU61 4.3 34.0 1.0 CB A:LEU61 4.4 35.8 1.0 CG2 A:THR62 4.4 27.1 1.0 CE1 A:TYR21 4.6 40.5 1.0 N A:GLN59 4.6 29.6 1.0 CG A:LEU61 4.6 33.3 1.0 CB A:TYR51 4.6 36.5 1.0 CG A:TYR51 4.7 36.5 1.0 CA A:LEU61 4.8 33.6 1.0 CG A:GLU49 4.8 32.4 1.0 CD2 A:LEU61 4.8 30.5 1.0 CG A:LEU20 4.8 56.3 1.0 CA A:GLN59 4.9 33.5 1.0 CD2 A:TYR51 4.9 38.5 1.0 CB A:LEU20 5.0 55.9 1.0 O A:LEU61 5.0 32.1 1.0

Potassium binding site 2 out of 4 in the Crystal Structure of P5 A0 in A Complex with PRX4 C-Term


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of P5 A0 in A Complex with PRX4 C-Term within 5.0Å range: probe atom residue distance (Å) B Occ A:K202 b:78.2 occ:1.00 O A:SER22 2.7 58.2 1.0 O A:VAL27 2.8 43.6 1.0 O A:ASP25 2.9 52.1 1.0 OD1 A:ASP25 3.3 54.5 1.0 C A:SER22 3.6 62.7 1.0 CA A:SER23 3.7 64.4 1.0 C A:ASP25 3.8 48.7 1.0 C A:VAL27 3.8 40.7 1.0 N A:SER23 4.0 67.7 1.0 C A:SER23 4.2 64.9 1.0 N A:VAL27 4.2 33.3 1.0 CG A:ASP25 4.2 49.5 1.0 N A:ASP25 4.3 57.0 1.0 O A:SER23 4.4 62.7 1.0 CA A:ASP25 4.5 49.5 1.0 CA A:VAL27 4.6 36.5 1.0 N A:ASP26 4.6 41.7 1.0 C A:ASP26 4.7 40.2 1.0 CA A:SER22 4.7 65.6 1.0 N A:ILE28 4.8 45.1 1.0 CA A:ASP26 4.8 41.4 1.0 N A:SER24 4.8 69.3 1.0 CA A:ILE28 4.8 47.3 1.0 OD2 A:ASP25 4.9 51.4 1.0 N A:SER22 4.9 65.7 1.0 CB A:SER23 5.0 63.5 1.0

Potassium binding site 3 out of 4 in the Crystal Structure of P5 A0 in A Complex with PRX4 C-Term


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of P5 A0 in A Complex with PRX4 C-Term within 5.0Å range: probe atom residue distance (Å) B Occ B:K205 b:69.6 occ:1.00 O B:ALA58 2.7 35.1 1.0 OG1 B:THR62 2.8 35.5 1.0 OE2 B:GLU49 2.8 29.0 1.0 OH B:TYR21 3.1 24.1 1.0 CD1 B:LEU20 3.5 50.9 1.0 OE1 B:GLU49 3.5 25.5 1.0 C B:ALA58 3.5 38.8 1.0 CD B:GLU49 3.5 27.0 1.0 N B:THR62 3.8 36.0 1.0 CB B:THR62 3.9 33.0 1.0 CA B:THR62 3.9 32.3 1.0 CZ B:TYR21 4.0 27.7 1.0 CB B:ALA58 4.0 27.4 1.0 CA B:ALA58 4.1 33.3 1.0 CE2 B:TYR21 4.3 29.9 1.0 N B:GLN59 4.4 34.9 1.0 CB B:LEU61 4.4 32.3 1.0 C B:LEU61 4.4 37.3 1.0 CB B:TYR51 4.5 25.7 1.0 CG B:TYR51 4.5 30.1 1.0 CD2 B:TYR51 4.6 37.1 1.0 CG2 B:THR62 4.7 28.7 1.0 CA B:GLN59 4.7 36.5 1.0 CG B:LEU20 4.7 55.0 1.0 CG B:LEU61 4.8 32.1 1.0 CB B:LEU20 4.8 57.2 1.0 CA B:LEU61 4.8 35.3 1.0 CG B:GLU49 5.0 23.6 1.0

Potassium binding site 4 out of 4 in the Crystal Structure of P5 A0 in A Complex with PRX4 C-Term


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of P5 A0 in A Complex with PRX4 C-Term within 5.0Å range: probe atom residue distance (Å) B Occ B:K206 b:84.1 occ:1.00 O B:VAL27 2.6 37.5 1.0 O B:SER22 2.6 68.5 1.0 O B:ASP25 2.9 47.1 1.0 OD1 B:ASP25 3.0 53.2 1.0 C B:SER22 3.3 64.8 1.0 CA B:SER23 3.5 67.1 1.0 C B:ASP25 3.7 49.7 1.0 C B:VAL27 3.7 34.6 1.0 N B:SER23 3.7 64.9 1.0 CG B:ASP25 3.8 51.2 1.0 N B:VAL27 4.0 39.9 1.0 C B:SER23 4.0 69.4 1.0 N B:ASP25 4.1 63.3 1.0 O B:SER23 4.3 69.1 1.0 OD2 B:ASP25 4.3 47.5 1.0 CA B:ASP25 4.3 55.5 1.0 CA B:VAL27 4.3 38.0 1.0 CA B:SER22 4.3 60.8 1.0 N B:SER22 4.4 57.1 1.0 N B:ASP26 4.5 45.5 1.0 C B:ASP26 4.6 44.1 1.0 CB B:ASP25 4.7 53.7 1.0 N B:ILE28 4.7 32.0 1.0 N B:SER24 4.7 73.0 1.0 CB B:VAL27 4.8 34.1 1.0 CA B:ASP26 4.8 44.7 1.0 CB B:SER23 4.8 72.3 1.0 CA B:ILE28 4.8 32.2 1.0

Y.Sato, R.Kojima, M.Okumura, M.Hagiwara, S.Masui, K.Maegawa, M.Saiki, T.Horibe, M.Suzuki, K.Inaba. Synergistic Cooperation of Pdi Family Members in Peroxiredoxin 4-Driven Oxidative Protein Folding Sci Rep V. 3 2456 2013.
ISSN: ESSN 2045-2322
PubMed: 23949117
DOI: 10.1038/SREP02456