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Potassium in PDB 6osr: Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1)

Protein crystallography data

The structure of Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1), PDB code: 6osr was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.74 / 2.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.100, 113.970, 246.380, 90.00, 91.44, 90.00
R / Rfree (%) 19.1 / 24.6

Other elements in 6osr:

The structure of Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) (pdb code 6osr). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1), PDB code: 6osr:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 6osr

Go back to Potassium Binding Sites List in 6osr
Potassium binding site 1 out of 2 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K607

b:48.9
occ:1.00
OD1 A:ASP96 2.8 63.0 1.0
O A:HOH724 2.8 30.6 1.0
O A:PHE97 2.9 30.9 1.0
O A:HOH731 2.9 43.4 1.0
O A:HOH757 3.0 33.3 1.0
C A:PHE97 3.8 32.1 1.0
CG A:ASP96 3.9 62.0 1.0
N A:PHE97 4.1 29.5 1.0
CB A:TYR100 4.4 28.7 1.0
CA A:PHE97 4.4 31.9 1.0
OD2 A:ASP96 4.5 79.2 1.0
CB A:PHE97 4.7 28.3 1.0
OE1 A:GLU101 4.8 40.3 1.0
N A:ILE98 4.8 25.3 1.0
C A:ASP96 4.9 26.4 1.0
CA A:ILE98 4.9 32.4 1.0
O A:HOH785 4.9 37.2 1.0
N A:TYR100 4.9 26.8 1.0
CA A:ASP96 5.0 29.2 1.0
CB A:ASN400 5.0 27.2 1.0

Potassium binding site 2 out of 2 in 6osr

Go back to Potassium Binding Sites List in 6osr
Potassium binding site 2 out of 2 in the Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K606

b:61.1
occ:1.00
O D:HOH737 2.7 36.8 1.0
OD1 D:ASP96 2.8 69.2 1.0
O D:HOH762 2.9 30.4 1.0
O D:PHE97 2.9 38.4 1.0
O D:HOH799 3.0 43.2 1.0
C D:PHE97 3.9 31.8 1.0
O D:HOH815 4.0 34.8 1.0
CG D:ASP96 4.0 62.2 1.0
N D:PHE97 4.1 30.9 1.0
CA D:PHE97 4.4 26.7 1.0
CB D:TYR100 4.5 32.9 1.0
OD2 D:ASP96 4.6 76.5 1.0
CB D:PHE97 4.7 22.7 1.0
O2 D:EDO603 4.7 60.9 1.0
OE2 D:GLU101 4.8 44.9 1.0
N D:ILE98 4.8 32.0 1.0
N D:TYR100 4.9 22.5 1.0
OE1 D:GLU101 4.9 34.2 1.0
C D:ASP96 4.9 29.4 1.0
CA D:ILE98 5.0 27.6 1.0

Reference:

D.G.Conrady, J.K.Yano, B.Calhoun, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Influenza Hemagglutinin From Strain A/Melbourne/1/1946(H1N1) To Be Published.
Page generated: Mon Aug 12 17:05:07 2024

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