Potassium in PDB 6o9u: KIRBAC3.1 at A Resolution of 2 Angstroms
Protein crystallography data
The structure of KIRBAC3.1 at A Resolution of 2 Angstroms, PDB code: 6o9u
was solved by
J.M.Gulbis,
O.B.Clarke,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.61 /
2.00
|
Space group
|
P 4 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
105.955,
105.955,
89.639,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.2 /
22.7
|
Other elements in 6o9u:
The structure of KIRBAC3.1 at A Resolution of 2 Angstroms also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the KIRBAC3.1 at A Resolution of 2 Angstroms
(pdb code 6o9u). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 9 binding sites of Potassium where determined in the
KIRBAC3.1 at A Resolution of 2 Angstroms, PDB code: 6o9u:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Potassium binding site 1 out
of 9 in 6o9u
Go back to
Potassium Binding Sites List in 6o9u
Potassium binding site 1 out
of 9 in the KIRBAC3.1 at A Resolution of 2 Angstroms
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of KIRBAC3.1 at A Resolution of 2 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K404
b:0.6
occ:0.47
|
HA3
|
A:GLY100
|
3.9
|
62.4
|
1.0
|
O
|
A:TYR99
|
4.4
|
45.5
|
1.0
|
K
|
A:K405
|
4.8
|
50.8
|
0.3
|
O
|
A:GLY100
|
4.8
|
47.1
|
1.0
|
CA
|
A:GLY100
|
4.8
|
51.9
|
1.0
|
C
|
A:GLY100
|
5.0
|
53.0
|
1.0
|
|
Potassium binding site 2 out
of 9 in 6o9u
Go back to
Potassium Binding Sites List in 6o9u
Potassium binding site 2 out
of 9 in the KIRBAC3.1 at A Resolution of 2 Angstroms
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of KIRBAC3.1 at A Resolution of 2 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K405
b:50.8
occ:0.28
|
O
|
A:TYR99
|
2.8
|
45.5
|
1.0
|
O
|
A:GLY98
|
2.8
|
39.9
|
1.0
|
K
|
A:K406
|
3.3
|
58.9
|
0.4
|
C
|
A:TYR99
|
3.5
|
41.9
|
1.0
|
HA3
|
A:GLY100
|
3.7
|
62.4
|
1.0
|
HA
|
A:TYR99
|
3.9
|
49.1
|
1.0
|
C
|
A:GLY98
|
4.0
|
36.9
|
1.0
|
N
|
A:GLY100
|
4.1
|
42.2
|
1.0
|
CA
|
A:TYR99
|
4.2
|
40.9
|
1.0
|
CA
|
A:GLY100
|
4.3
|
51.9
|
1.0
|
HA2
|
A:GLY100
|
4.5
|
62.4
|
1.0
|
N
|
A:TYR99
|
4.6
|
40.6
|
1.0
|
K
|
A:K404
|
4.8
|
0.6
|
0.5
|
H
|
A:GLY100
|
4.8
|
50.8
|
1.0
|
|
Potassium binding site 3 out
of 9 in 6o9u
Go back to
Potassium Binding Sites List in 6o9u
Potassium binding site 3 out
of 9 in the KIRBAC3.1 at A Resolution of 2 Angstroms
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of KIRBAC3.1 at A Resolution of 2 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K406
b:58.9
occ:0.37
|
O
|
A:ILE97
|
2.7
|
38.0
|
1.0
|
O
|
A:GLY98
|
2.8
|
39.9
|
1.0
|
K
|
A:K407
|
2.9
|
63.6
|
0.3
|
K
|
A:K405
|
3.3
|
50.8
|
0.3
|
C
|
A:GLY98
|
3.5
|
36.9
|
1.0
|
HA3
|
A:GLY98
|
3.5
|
56.9
|
1.0
|
C
|
A:ILE97
|
3.9
|
39.6
|
1.0
|
CA
|
A:GLY98
|
4.0
|
47.4
|
1.0
|
N
|
A:GLY98
|
4.4
|
38.3
|
1.0
|
HA
|
A:TYR99
|
4.5
|
49.1
|
1.0
|
N
|
A:TYR99
|
4.5
|
40.6
|
1.0
|
HA2
|
A:GLY98
|
4.8
|
56.9
|
1.0
|
CA
|
A:TYR99
|
4.9
|
40.9
|
1.0
|
HA
|
A:ILE97
|
5.0
|
47.0
|
1.0
|
|
Potassium binding site 4 out
of 9 in 6o9u
Go back to
Potassium Binding Sites List in 6o9u
Potassium binding site 4 out
of 9 in the KIRBAC3.1 at A Resolution of 2 Angstroms
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of KIRBAC3.1 at A Resolution of 2 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K407
b:63.6
occ:0.32
|
O
|
A:THR96
|
2.8
|
40.0
|
1.0
|
O
|
A:ILE97
|
2.9
|
38.0
|
1.0
|
K
|
A:K406
|
2.9
|
58.9
|
0.4
|
BA
|
A:BA413
|
3.3
|
0.5
|
0.4
|
HA
|
A:ILE97
|
3.6
|
47.0
|
1.0
|
C
|
A:ILE97
|
3.6
|
39.6
|
1.0
|
C
|
A:THR96
|
3.9
|
39.3
|
1.0
|
CA
|
A:ILE97
|
4.0
|
39.1
|
1.0
|
HA3
|
A:GLY98
|
4.4
|
56.9
|
1.0
|
N
|
A:ILE97
|
4.5
|
46.1
|
1.0
|
N
|
A:GLY98
|
4.5
|
38.3
|
1.0
|
HB
|
A:THR96
|
4.5
|
54.6
|
1.0
|
HG1
|
A:THR96
|
4.8
|
52.9
|
1.0
|
CA
|
A:GLY98
|
4.9
|
47.4
|
1.0
|
|
Potassium binding site 5 out
of 9 in 6o9u
Go back to
Potassium Binding Sites List in 6o9u
Potassium binding site 5 out
of 9 in the KIRBAC3.1 at A Resolution of 2 Angstroms
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of KIRBAC3.1 at A Resolution of 2 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K408
b:0.6
occ:0.24
|
HG
|
A:LEU124
|
4.3
|
49.1
|
1.0
|
HD21
|
A:LEU124
|
4.4
|
56.3
|
1.0
|
HB1
|
A:ALA128
|
4.5
|
41.8
|
1.0
|
HB2
|
A:ALA128
|
4.5
|
41.8
|
1.0
|
HB3
|
A:ALA128
|
4.6
|
41.8
|
1.0
|
CB
|
A:ALA128
|
4.7
|
34.8
|
1.0
|
HD11
|
A:LEU124
|
4.8
|
57.5
|
1.0
|
|
Potassium binding site 6 out
of 9 in 6o9u
Go back to
Potassium Binding Sites List in 6o9u
Potassium binding site 6 out
of 9 in the KIRBAC3.1 at A Resolution of 2 Angstroms
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of KIRBAC3.1 at A Resolution of 2 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K409
b:53.2
occ:0.37
|
HADA
|
A:TMO401
|
2.8
|
50.4
|
1.0
|
K
|
A:K410
|
2.9
|
90.6
|
0.3
|
HH
|
A:TYR132
|
3.1
|
81.8
|
1.0
|
HE2
|
A:TYR132
|
3.3
|
71.9
|
1.0
|
HAB
|
A:TMO401
|
3.4
|
51.9
|
1.0
|
CAD
|
A:TMO401
|
3.8
|
41.9
|
1.0
|
OH
|
A:TYR132
|
4.0
|
68.1
|
1.0
|
HAAA
|
A:TMO401
|
4.0
|
59.0
|
1.0
|
HADB
|
A:TMO401
|
4.0
|
50.4
|
1.0
|
CE2
|
A:TYR132
|
4.1
|
59.9
|
1.0
|
CAB
|
A:TMO401
|
4.2
|
43.2
|
1.0
|
HAD
|
A:TMO401
|
4.3
|
50.4
|
1.0
|
HABA
|
A:TMO401
|
4.4
|
51.9
|
1.0
|
NAC
|
A:TMO401
|
4.5
|
47.0
|
1.0
|
CZ
|
A:TYR132
|
4.6
|
58.3
|
1.0
|
CAA
|
A:TMO401
|
4.7
|
49.0
|
1.0
|
HABB
|
A:TMO401
|
5.0
|
51.9
|
1.0
|
|
Potassium binding site 7 out
of 9 in 6o9u
Go back to
Potassium Binding Sites List in 6o9u
Potassium binding site 7 out
of 9 in the KIRBAC3.1 at A Resolution of 2 Angstroms
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of KIRBAC3.1 at A Resolution of 2 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K410
b:90.6
occ:0.26
|
K
|
A:K409
|
2.9
|
53.2
|
0.4
|
HAB
|
A:TMO401
|
3.0
|
51.9
|
1.0
|
HABA
|
A:TMO401
|
3.1
|
51.9
|
1.0
|
O
|
A:HOH656
|
3.4
|
75.0
|
1.0
|
HADA
|
A:TMO401
|
3.5
|
50.4
|
1.0
|
CAB
|
A:TMO401
|
3.5
|
43.2
|
1.0
|
HADB
|
A:TMO401
|
3.6
|
50.4
|
1.0
|
CAD
|
A:TMO401
|
3.9
|
41.9
|
1.0
|
HABB
|
A:TMO401
|
4.2
|
51.9
|
1.0
|
NAC
|
A:TMO401
|
4.4
|
47.0
|
1.0
|
HAD
|
A:TMO401
|
4.8
|
50.4
|
1.0
|
HAAA
|
A:TMO401
|
5.0
|
59.0
|
1.0
|
|
Potassium binding site 8 out
of 9 in 6o9u
Go back to
Potassium Binding Sites List in 6o9u
Potassium binding site 8 out
of 9 in the KIRBAC3.1 at A Resolution of 2 Angstroms
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of KIRBAC3.1 at A Resolution of 2 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K411
b:79.0
occ:0.78
|
O
|
A:HOH634
|
2.6
|
65.0
|
0.8
|
K
|
A:K412
|
2.7
|
77.0
|
0.7
|
HG2
|
A:MET121
|
3.1
|
72.1
|
1.0
|
HD22
|
A:LEU124
|
3.5
|
56.3
|
1.0
|
HD23
|
A:LEU124
|
3.6
|
56.3
|
1.0
|
HA
|
A:MET121
|
3.6
|
53.1
|
1.0
|
HG21
|
A:THR96
|
3.8
|
47.5
|
1.0
|
CG
|
A:MET121
|
3.9
|
60.0
|
1.0
|
HG3
|
A:MET121
|
3.9
|
72.1
|
1.0
|
CD2
|
A:LEU124
|
4.0
|
46.9
|
1.0
|
OG1
|
A:THR96
|
4.3
|
44.0
|
1.0
|
HG23
|
A:THR96
|
4.3
|
47.5
|
1.0
|
HE3
|
A:MET121
|
4.3
|
64.0
|
1.0
|
CA
|
A:MET121
|
4.4
|
44.2
|
1.0
|
CG2
|
A:THR96
|
4.5
|
39.5
|
1.0
|
HD21
|
A:LEU124
|
4.5
|
56.3
|
1.0
|
CB
|
A:MET121
|
4.6
|
48.4
|
1.0
|
HB3
|
A:MET121
|
4.7
|
58.2
|
1.0
|
HB3
|
A:LEU124
|
4.7
|
43.0
|
1.0
|
HB2
|
A:LEU124
|
4.7
|
43.0
|
1.0
|
N
|
A:MET121
|
4.8
|
41.2
|
1.0
|
HE2
|
A:MET121
|
4.9
|
64.0
|
1.0
|
HG1
|
A:THR96
|
4.9
|
52.9
|
1.0
|
O
|
A:GLY120
|
4.9
|
42.1
|
1.0
|
CE
|
A:MET121
|
4.9
|
53.3
|
1.0
|
C
|
A:GLY120
|
5.0
|
41.1
|
1.0
|
|
Potassium binding site 9 out
of 9 in 6o9u
Go back to
Potassium Binding Sites List in 6o9u
Potassium binding site 9 out
of 9 in the KIRBAC3.1 at A Resolution of 2 Angstroms
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 9 of KIRBAC3.1 at A Resolution of 2 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K412
b:77.0
occ:0.72
|
K
|
A:K411
|
2.7
|
79.0
|
0.8
|
O
|
A:HOH634
|
2.8
|
65.0
|
0.8
|
OG1
|
A:THR96
|
3.2
|
44.0
|
1.0
|
O
|
A:ALA95
|
3.4
|
38.3
|
1.0
|
HG1
|
A:THR96
|
3.5
|
52.9
|
1.0
|
HD22
|
A:LEU124
|
3.9
|
56.3
|
1.0
|
HA
|
A:ALA95
|
4.1
|
43.1
|
1.0
|
C
|
A:ALA95
|
4.1
|
33.5
|
1.0
|
HG23
|
A:THR96
|
4.3
|
47.5
|
1.0
|
HG21
|
A:THR96
|
4.4
|
47.5
|
1.0
|
CB
|
A:THR96
|
4.4
|
45.4
|
1.0
|
CG2
|
A:THR96
|
4.6
|
39.5
|
1.0
|
CA
|
A:ALA95
|
4.7
|
35.9
|
1.0
|
CD2
|
A:LEU124
|
4.8
|
46.9
|
1.0
|
HD23
|
A:LEU124
|
4.9
|
56.3
|
1.0
|
HB1
|
A:ALA95
|
5.0
|
45.4
|
1.0
|
|
Reference:
J.M.Gulbis,
O.B.Clarke,
K.A.Black,
D.M.Miller.
KIRBAC3.1 at A Resolution of 2 Angstroms To Be Published.
Page generated: Mon Aug 12 17:01:25 2024
|