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Potassium in PDB 6nax: Olfactomedin Domain of Mouse Myocilin

Protein crystallography data

The structure of Olfactomedin Domain of Mouse Myocilin, PDB code: 6nax was solved by A.C.Patterson-Orazem, S.E.Hill, R.L.Lieberman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.10 / 1.55
Space group P 4
Cell size a, b, c (Å), α, β, γ (°) 111.955, 111.955, 44.129, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 17.8

Other elements in 6nax:

The structure of Olfactomedin Domain of Mouse Myocilin also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Sodium (Na) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Olfactomedin Domain of Mouse Myocilin (pdb code 6nax). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Olfactomedin Domain of Mouse Myocilin, PDB code: 6nax:

Potassium binding site 1 out of 1 in 6nax

Go back to Potassium Binding Sites List in 6nax
Potassium binding site 1 out of 1 in the Olfactomedin Domain of Mouse Myocilin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Olfactomedin Domain of Mouse Myocilin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K505

b:15.9
occ:1.00
OG A:SER310 3.0 9.6 1.0
O A:HOH703 3.1 18.3 1.0
N A:TYR362 3.2 8.6 1.0
CB A:SER310 3.6 10.4 1.0
CA A:SER310 3.8 7.8 1.0
CZ3 A:TRP359 3.9 14.4 1.0
CA A:TYR362 3.9 7.0 1.0
CA A:GLY361 4.0 9.0 1.0
C A:TYR362 4.1 5.9 1.0
C A:GLY361 4.1 8.8 1.0
CB A:TYR362 4.1 9.4 1.0
CG2 A:THR363 4.1 9.4 1.0
N A:THR363 4.3 8.6 1.0
CH2 A:TRP359 4.5 12.9 1.0
O A:TYR362 4.5 8.0 1.0
N A:SER310 4.6 9.7 1.0
CG A:TYR362 4.7 10.1 1.0
O B:HOH631 4.8 29.0 1.0
C A:SER310 4.8 7.2 1.0
CE2 A:TYR253 4.8 17.4 1.0
O A:GLY360 4.8 10.2 1.0
N A:THR311 4.9 7.3 1.0
CE3 A:TRP359 4.9 13.8 1.0
CA A:THR363 4.9 7.2 1.0
CD2 A:TYR362 4.9 12.2 1.0

Reference:

A.C.Patterson-Orazem, S.E.Hill, Y.Wang, I.M.Dominic, C.K.Hall, R.L.Lieberman. Differential Misfolding Properties of Glaucoma-Associated Olfactomedin Domains From Humans and Mice. Biochemistry V. 58 1718 2019.
ISSN: ISSN 1520-4995
PubMed: 30802039
DOI: 10.1021/ACS.BIOCHEM.8B01309
Page generated: Mon Dec 14 00:59:43 2020

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