Potassium in PDB 6bjp: Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
Enzymatic activity of Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
All present enzymatic activity of Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa:
1.2.1.8;
Protein crystallography data
The structure of Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa, PDB code: 6bjp
was solved by
E.I.Carrizosa-Carbajal,
L.Gonzalez-Segura,
R.A.Munoz-Clares,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.83 /
2.10
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
85.224,
96.543,
280.876,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.4 /
20.4
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
(pdb code 6bjp). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the
Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa, PDB code: 6bjp:
Jump to Potassium binding site number:
1;
2;
3;
4;
Potassium binding site 1 out
of 4 in 6bjp
Go back to
Potassium Binding Sites List in 6bjp
Potassium binding site 1 out
of 4 in the Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K501
b:20.8
occ:1.00
|
O
|
A:ASP93
|
2.7
|
18.8
|
1.0
|
O
|
A:VAL180
|
2.7
|
19.4
|
1.0
|
OG1
|
A:THR26
|
2.7
|
23.9
|
1.0
|
OD1
|
A:ASP93
|
2.8
|
23.6
|
1.0
|
O
|
A:ILE27
|
2.8
|
16.9
|
1.0
|
O
|
A:HOH690
|
2.9
|
20.3
|
1.0
|
O
|
A:HOH664
|
3.6
|
32.8
|
1.0
|
N
|
A:ILE27
|
3.6
|
23.1
|
1.0
|
C
|
A:ASP93
|
3.7
|
15.1
|
1.0
|
CG
|
A:ASP93
|
3.7
|
23.1
|
1.0
|
C
|
A:ILE27
|
3.8
|
20.7
|
1.0
|
C
|
A:VAL180
|
3.9
|
23.4
|
1.0
|
CA
|
A:ASP93
|
4.0
|
16.1
|
1.0
|
CB
|
A:THR26
|
4.0
|
19.8
|
1.0
|
C
|
A:THR26
|
4.3
|
23.9
|
1.0
|
CA
|
A:ILE27
|
4.3
|
23.3
|
1.0
|
CA
|
A:THR26
|
4.4
|
19.4
|
1.0
|
CB
|
A:ASP93
|
4.4
|
20.1
|
1.0
|
OD2
|
A:ASP93
|
4.6
|
20.0
|
1.0
|
CG2
|
A:THR181
|
4.6
|
24.0
|
1.0
|
CA
|
A:THR181
|
4.6
|
20.0
|
1.0
|
CD
|
A:PRO29
|
4.6
|
15.7
|
1.0
|
O
|
A:VAL329
|
4.6
|
17.5
|
1.0
|
CD1
|
A:LEU35
|
4.7
|
17.5
|
1.0
|
CG1
|
A:VAL180
|
4.7
|
16.4
|
1.0
|
N
|
A:THR181
|
4.7
|
18.1
|
1.0
|
N
|
A:ASN28
|
4.8
|
19.4
|
1.0
|
N
|
A:THR94
|
4.9
|
14.5
|
1.0
|
CA
|
A:VAL180
|
4.9
|
17.9
|
1.0
|
O
|
A:HOH656
|
5.0
|
25.4
|
1.0
|
|
Potassium binding site 2 out
of 4 in 6bjp
Go back to
Potassium Binding Sites List in 6bjp
Potassium binding site 2 out
of 4 in the Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K501
b:27.0
occ:1.00
|
O
|
B:ILE27
|
2.6
|
30.7
|
1.0
|
O
|
B:VAL180
|
2.7
|
27.4
|
1.0
|
O
|
B:ASP93
|
2.8
|
23.1
|
1.0
|
OG1
|
B:THR26
|
2.8
|
32.6
|
1.0
|
O
|
B:HOH635
|
2.9
|
25.1
|
1.0
|
OD1
|
B:ASP93
|
2.9
|
30.9
|
1.0
|
N
|
B:ILE27
|
3.5
|
29.4
|
1.0
|
C
|
B:ILE27
|
3.6
|
31.3
|
1.0
|
C
|
B:ASP93
|
3.7
|
28.3
|
1.0
|
C
|
B:VAL180
|
3.9
|
28.2
|
1.0
|
CG
|
B:ASP93
|
3.9
|
32.0
|
1.0
|
CA
|
B:ASP93
|
4.0
|
26.5
|
1.0
|
CB
|
B:THR26
|
4.1
|
29.2
|
1.0
|
CA
|
B:ILE27
|
4.2
|
32.8
|
1.0
|
C
|
B:THR26
|
4.2
|
33.3
|
1.0
|
CA
|
B:THR26
|
4.4
|
33.3
|
1.0
|
CB
|
B:ASP93
|
4.5
|
21.6
|
1.0
|
CG2
|
B:THR181
|
4.6
|
21.4
|
1.0
|
CD
|
B:PRO29
|
4.6
|
21.0
|
1.0
|
CG1
|
B:VAL180
|
4.6
|
31.7
|
1.0
|
CA
|
B:THR181
|
4.7
|
21.6
|
1.0
|
CD1
|
B:LEU35
|
4.7
|
27.0
|
1.0
|
N
|
B:ASN28
|
4.7
|
28.2
|
1.0
|
N
|
B:THR181
|
4.8
|
24.5
|
1.0
|
O
|
B:VAL329
|
4.8
|
23.2
|
1.0
|
OD2
|
B:ASP93
|
4.8
|
31.2
|
1.0
|
CA
|
B:VAL180
|
4.9
|
28.7
|
1.0
|
N
|
B:THR94
|
5.0
|
20.0
|
1.0
|
CB
|
B:ILE27
|
5.0
|
39.3
|
1.0
|
|
Potassium binding site 3 out
of 4 in 6bjp
Go back to
Potassium Binding Sites List in 6bjp
Potassium binding site 3 out
of 4 in the Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K501
b:26.4
occ:1.00
|
O
|
C:VAL180
|
2.7
|
23.8
|
1.0
|
OG1
|
C:THR26
|
2.7
|
24.9
|
1.0
|
O
|
C:ASP93
|
2.7
|
20.7
|
1.0
|
O
|
C:ILE27
|
2.8
|
18.1
|
1.0
|
O
|
C:HOH723
|
2.9
|
27.6
|
1.0
|
OD1
|
C:ASP93
|
2.9
|
16.6
|
1.0
|
O
|
C:HOH655
|
3.3
|
38.4
|
1.0
|
N
|
C:ILE27
|
3.6
|
21.1
|
1.0
|
C
|
C:ASP93
|
3.7
|
21.7
|
1.0
|
C
|
C:ILE27
|
3.8
|
24.6
|
1.0
|
CG
|
C:ASP93
|
3.9
|
28.7
|
1.0
|
C
|
C:VAL180
|
3.9
|
27.1
|
1.0
|
CB
|
C:THR26
|
4.0
|
24.1
|
1.0
|
CA
|
C:ASP93
|
4.0
|
22.8
|
1.0
|
C
|
C:THR26
|
4.2
|
21.5
|
1.0
|
CA
|
C:ILE27
|
4.3
|
22.1
|
1.0
|
CA
|
C:THR26
|
4.3
|
22.8
|
1.0
|
CB
|
C:ASP93
|
4.5
|
23.6
|
1.0
|
CA
|
C:THR181
|
4.6
|
19.1
|
1.0
|
CD1
|
C:LEU35
|
4.7
|
25.7
|
1.0
|
CG1
|
C:VAL180
|
4.7
|
32.1
|
1.0
|
CG2
|
C:THR181
|
4.7
|
16.6
|
1.0
|
OD2
|
C:ASP93
|
4.7
|
27.4
|
1.0
|
CD
|
C:PRO29
|
4.7
|
20.6
|
1.0
|
N
|
C:THR181
|
4.7
|
17.8
|
1.0
|
O
|
C:VAL329
|
4.7
|
27.9
|
1.0
|
N
|
C:ASN28
|
4.8
|
18.7
|
1.0
|
CA
|
C:VAL180
|
4.9
|
19.1
|
1.0
|
N
|
C:THR94
|
4.9
|
19.6
|
1.0
|
O
|
C:HOH621
|
5.0
|
28.6
|
1.0
|
|
Potassium binding site 4 out
of 4 in 6bjp
Go back to
Potassium Binding Sites List in 6bjp
Potassium binding site 4 out
of 4 in the Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Apo Form of the E124S Mutant of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K501
b:46.5
occ:1.00
|
O
|
D:VAL180
|
2.7
|
48.4
|
1.0
|
O
|
D:ASP93
|
2.8
|
46.5
|
1.0
|
O
|
D:ILE27
|
2.8
|
44.8
|
1.0
|
O
|
D:HOH643
|
2.8
|
41.4
|
1.0
|
OD1
|
D:ASP93
|
2.9
|
43.1
|
1.0
|
OG1
|
D:THR26
|
2.9
|
40.9
|
1.0
|
N
|
D:ILE27
|
3.6
|
51.3
|
1.0
|
C
|
D:ILE27
|
3.7
|
46.0
|
1.0
|
C
|
D:ASP93
|
3.8
|
43.2
|
1.0
|
CG
|
D:ASP93
|
3.9
|
41.4
|
1.0
|
C
|
D:VAL180
|
3.9
|
44.8
|
1.0
|
CA
|
D:ASP93
|
4.1
|
42.9
|
1.0
|
CB
|
D:THR26
|
4.1
|
47.5
|
1.0
|
CA
|
D:ILE27
|
4.2
|
47.5
|
1.0
|
C
|
D:THR26
|
4.2
|
53.4
|
1.0
|
CA
|
D:THR26
|
4.4
|
51.0
|
1.0
|
CG1
|
D:VAL180
|
4.5
|
42.0
|
1.0
|
O
|
D:VAL329
|
4.6
|
40.1
|
1.0
|
CB
|
D:ASP93
|
4.6
|
39.9
|
1.0
|
CD
|
D:PRO29
|
4.7
|
47.3
|
1.0
|
CG2
|
D:THR181
|
4.7
|
41.1
|
1.0
|
OD2
|
D:ASP93
|
4.7
|
38.8
|
1.0
|
N
|
D:ASN28
|
4.7
|
42.2
|
1.0
|
CA
|
D:THR181
|
4.8
|
39.1
|
1.0
|
CA
|
D:VAL180
|
4.8
|
43.5
|
1.0
|
N
|
D:THR181
|
4.8
|
38.6
|
1.0
|
CD1
|
D:LEU35
|
4.9
|
49.2
|
1.0
|
N
|
D:THR94
|
5.0
|
43.5
|
1.0
|
|
Reference:
E.I.Carrizosa-Carbajal,
L.Gonzalez-Segura,
R.A.Munoz-Clares.
Structural Role of GLU124 of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa To Be Published.
Page generated: Mon Aug 12 15:27:20 2024
|