Potassium in PDB 6bj9: Crystal Structure of ACAT2 Thiolase From Ascaris Suum
Protein crystallography data
The structure of Crystal Structure of ACAT2 Thiolase From Ascaris Suum, PDB code: 6bj9
was solved by
M.R.Blaisse,
B.Fu,
M.C.Y.Chang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
74.92 /
1.53
|
Space group
|
P 2 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
71.574,
88.123,
142.265,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
13.9 /
16
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of ACAT2 Thiolase From Ascaris Suum
(pdb code 6bj9). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the
Crystal Structure of ACAT2 Thiolase From Ascaris Suum, PDB code: 6bj9:
Jump to Potassium binding site number:
1;
2;
Potassium binding site 1 out
of 2 in 6bj9
Go back to
Potassium Binding Sites List in 6bj9
Potassium binding site 1 out
of 2 in the Crystal Structure of ACAT2 Thiolase From Ascaris Suum
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of ACAT2 Thiolase From Ascaris Suum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K401
b:10.6
occ:1.00
|
O
|
A:ALA246
|
2.7
|
11.9
|
1.0
|
O
|
A:VAL344
|
2.7
|
10.6
|
1.0
|
OH
|
A:TYR184
|
2.8
|
11.3
|
1.0
|
O
|
A:ALA244
|
2.8
|
11.4
|
1.0
|
O
|
A:ALA243
|
2.9
|
11.8
|
1.0
|
O
|
A:HOH776
|
2.9
|
13.2
|
1.0
|
HG23
|
A:THR248
|
3.0
|
14.5
|
1.0
|
HA
|
A:ALA244
|
3.0
|
14.2
|
1.0
|
HG13
|
A:VAL344
|
3.3
|
13.0
|
1.0
|
C
|
A:ALA244
|
3.4
|
10.2
|
1.0
|
HE2
|
A:TYR184
|
3.6
|
13.1
|
1.0
|
CA
|
A:ALA244
|
3.6
|
11.8
|
1.0
|
CG2
|
A:THR248
|
3.8
|
12.1
|
1.0
|
CZ
|
A:TYR184
|
3.8
|
11.2
|
1.0
|
C
|
A:VAL344
|
3.8
|
9.0
|
1.0
|
HG21
|
A:THR248
|
3.8
|
14.5
|
1.0
|
C
|
A:ALA246
|
3.9
|
9.8
|
1.0
|
H
|
A:ALA246
|
3.9
|
13.7
|
1.0
|
C
|
A:ALA243
|
3.9
|
11.0
|
1.0
|
HG22
|
A:THR248
|
4.0
|
14.5
|
1.0
|
CE2
|
A:TYR184
|
4.1
|
10.9
|
1.0
|
HG12
|
A:VAL344
|
4.1
|
13.0
|
1.0
|
HA
|
A:VAL344
|
4.1
|
12.1
|
1.0
|
CG1
|
A:VAL344
|
4.1
|
10.8
|
1.0
|
HA
|
A:SER247
|
4.2
|
11.5
|
1.0
|
O
|
A:HOH544
|
4.3
|
12.0
|
1.0
|
N
|
A:ALA244
|
4.3
|
11.0
|
1.0
|
N
|
A:ALA246
|
4.3
|
11.4
|
1.0
|
N
|
A:ASN245
|
4.4
|
10.2
|
1.0
|
O
|
A:HOH706
|
4.4
|
12.8
|
1.0
|
CA
|
A:VAL344
|
4.5
|
10.1
|
1.0
|
HA
|
A:SER345
|
4.5
|
11.0
|
1.0
|
HA
|
A:ASN245
|
4.7
|
10.0
|
1.0
|
CA
|
A:ALA246
|
4.8
|
9.6
|
1.0
|
CA
|
A:SER247
|
4.8
|
9.6
|
1.0
|
HG11
|
A:VAL344
|
4.8
|
13.0
|
1.0
|
N
|
A:SER247
|
4.8
|
9.2
|
1.0
|
C
|
A:SER247
|
4.8
|
8.9
|
1.0
|
CB
|
A:VAL344
|
4.9
|
9.6
|
1.0
|
HB1
|
A:ALA244
|
4.9
|
15.9
|
1.0
|
CB
|
A:ALA244
|
4.9
|
13.3
|
1.0
|
HG22
|
A:VAL344
|
4.9
|
13.4
|
1.0
|
N
|
A:SER345
|
4.9
|
9.1
|
1.0
|
CA
|
A:ASN245
|
5.0
|
8.3
|
1.0
|
C
|
A:ASN245
|
5.0
|
10.2
|
1.0
|
O
|
A:HOH817
|
5.0
|
32.8
|
1.0
|
|
Potassium binding site 2 out
of 2 in 6bj9
Go back to
Potassium Binding Sites List in 6bj9
Potassium binding site 2 out
of 2 in the Crystal Structure of ACAT2 Thiolase From Ascaris Suum
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of ACAT2 Thiolase From Ascaris Suum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K401
b:9.9
occ:1.00
|
O
|
B:ALA246
|
2.7
|
10.5
|
1.0
|
O
|
B:VAL344
|
2.7
|
10.0
|
1.0
|
OH
|
B:TYR184
|
2.8
|
10.9
|
1.0
|
O
|
B:ALA244
|
2.8
|
10.9
|
1.0
|
O
|
B:HOH780
|
2.9
|
13.3
|
1.0
|
O
|
B:ALA243
|
2.9
|
11.5
|
1.0
|
HA
|
B:ALA244
|
3.0
|
13.6
|
1.0
|
HG23
|
B:THR248
|
3.0
|
14.2
|
1.0
|
HG13
|
B:VAL344
|
3.3
|
12.1
|
1.0
|
C
|
B:ALA244
|
3.4
|
10.2
|
1.0
|
CA
|
B:ALA244
|
3.6
|
11.3
|
1.0
|
HE2
|
B:TYR184
|
3.7
|
12.1
|
1.0
|
CG2
|
B:THR248
|
3.8
|
11.9
|
1.0
|
CZ
|
B:TYR184
|
3.8
|
8.6
|
1.0
|
C
|
B:VAL344
|
3.8
|
9.6
|
1.0
|
HG21
|
B:THR248
|
3.9
|
14.2
|
1.0
|
C
|
B:ALA246
|
3.9
|
9.1
|
1.0
|
H
|
B:ALA246
|
3.9
|
10.1
|
1.0
|
C
|
B:ALA243
|
4.0
|
12.1
|
1.0
|
HA
|
B:VAL344
|
4.0
|
10.4
|
1.0
|
HG22
|
B:THR248
|
4.1
|
14.2
|
1.0
|
HG12
|
B:VAL344
|
4.1
|
12.1
|
1.0
|
CE2
|
B:TYR184
|
4.1
|
10.0
|
1.0
|
CG1
|
B:VAL344
|
4.1
|
10.0
|
1.0
|
HA
|
B:SER247
|
4.2
|
13.2
|
1.0
|
O
|
B:HOH560
|
4.3
|
13.0
|
1.0
|
N
|
B:ALA244
|
4.3
|
11.3
|
1.0
|
N
|
B:ALA246
|
4.3
|
8.4
|
1.0
|
O
|
B:HOH659
|
4.4
|
12.6
|
1.0
|
N
|
B:ASN245
|
4.4
|
10.3
|
1.0
|
CA
|
B:VAL344
|
4.4
|
8.7
|
1.0
|
HA
|
B:SER345
|
4.5
|
10.9
|
1.0
|
HA
|
B:ASN245
|
4.7
|
10.4
|
1.0
|
CA
|
B:ALA246
|
4.8
|
8.8
|
1.0
|
CA
|
B:SER247
|
4.8
|
11.0
|
1.0
|
N
|
B:SER247
|
4.8
|
8.5
|
1.0
|
C
|
B:SER247
|
4.8
|
9.2
|
1.0
|
HB1
|
B:ALA244
|
4.8
|
13.6
|
1.0
|
HG11
|
B:VAL344
|
4.8
|
12.1
|
1.0
|
CB
|
B:VAL344
|
4.9
|
8.0
|
1.0
|
CB
|
B:ALA244
|
4.9
|
11.3
|
1.0
|
N
|
B:SER345
|
4.9
|
9.8
|
1.0
|
HG22
|
B:VAL344
|
5.0
|
13.7
|
1.0
|
CA
|
B:ASN245
|
5.0
|
8.7
|
1.0
|
N
|
B:THR248
|
5.0
|
10.0
|
1.0
|
C
|
B:ASN245
|
5.0
|
8.6
|
1.0
|
H
|
B:ASN245
|
5.0
|
12.4
|
1.0
|
|
Reference:
M.R.Blaisse,
B.Fu,
M.C.Y.Chang.
Structural and Biochemical Studies of Substrate Selectivity in Ascaris Suum Thiolases. Biochemistry V. 57 3155 2018.
ISSN: ISSN 1520-4995
PubMed: 29381332
DOI: 10.1021/ACS.BIOCHEM.7B01123
Page generated: Mon Aug 12 15:27:20 2024
|