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Potassium in PDB 4eei: Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate

Enzymatic activity of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate

All present enzymatic activity of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate:
4.3.2.2;

Protein crystallography data

The structure of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate, PDB code: 4eei was solved by N.Maltseva, Y.Kim, S.Shatsman, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.33 / 1.92
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 88.759, 88.759, 254.724, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 19.9

Other elements in 4eei:

The structure of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate (pdb code 4eei). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate, PDB code: 4eei:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in 4eei

Go back to Potassium Binding Sites List in 4eei
Potassium binding site 1 out of 3 in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K503

b:0.2
occ:1.00
 O A:VAL430 2.2 43.8 1.0
O A:ASP427 2.5 38.1 1.0
O1 A:EDO506 2.6 84.7 1.0
O A:ARG433 2.7 48.9 0.7
C A:VAL430 3.2 40.5 1.0
C A:ARG433 3.3 52.2 0.7
CA A:LYS431 3.7 55.2 1.0
C A:ASP427 3.7 38.4 1.0
O A:LYS431 3.8 63.5 1.0
N A:LYS431 3.8 45.2 1.0
C A:LYS431 3.9 60.3 1.0
C1 A:EDO506 4.0 83.8 1.0
N A:VAL430 4.1 33.5 1.0
CA A:ARG428 4.2 34.4 1.0
O A:ARG428 4.2 31.1 1.0
C A:ARG428 4.2 30.8 1.0
CA A:VAL430 4.3 34.1 1.0
N A:ARG428 4.4 32.3 1.0
N A:ARG433 4.4 55.6 0.7
CA A:ARG433 4.5 55.3 0.7
C2 A:EDO506 4.6 83.3 1.0
N A:ALA432 4.8 57.4 1.0
CA A:ASP427 4.8 35.5 1.0
N A:SER429 4.8 29.5 1.0
C A:SER429 5.0 32.3 1.0

Potassium binding site 2 out of 3 in 4eei

Go back to Potassium Binding Sites List in 4eei
Potassium binding site 2 out of 3 in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K510

b:64.8
occ:1.00
 O A:HOH888 2.5 45.7 1.0
O2 A:EDO508 2.5 62.5 1.0
O A:ASP247 2.7 33.1 1.0
O A:HOH883 2.8 45.2 1.0
O2 B:EDO514 2.8 58.0 1.0
O B:ASP247 2.9 35.4 1.0
C A:ASP247 3.5 29.0 1.0
CA A:ASP247 3.7 30.2 1.0
NH2 B:ARG344 3.8 36.7 1.0
C2 A:EDO508 3.8 60.9 1.0
C B:ASP247 3.8 24.8 1.0
CB A:ASP247 3.9 31.2 1.0
C2 B:EDO514 4.1 61.4 1.0
CA B:ASP247 4.3 25.8 1.0
NH2 A:ARG344 4.3 36.5 1.0
CB B:ASP247 4.4 28.9 1.0
O1 B:EDO514 4.5 71.2 1.0
N A:VAL248 4.7 25.2 1.0
CZ B:ARG344 4.8 31.7 1.0
C1 B:EDO514 4.8 67.3 1.0
OD2 A:ASP247 4.8 31.4 1.0
C1 A:EDO508 4.8 59.5 1.0
N B:VAL248 4.9 26.7 1.0
CG A:ASP247 4.9 30.6 1.0
O1 A:EDO508 5.0 62.3 1.0

Potassium binding site 3 out of 3 in 4eei

Go back to Potassium Binding Sites List in 4eei
Potassium binding site 3 out of 3 in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K510

b:58.6
occ:1.00
 O B:VAL430 2.3 29.4 1.0
O B:LYS431 2.4 32.8 1.0
O B:ASP427 2.5 26.5 1.0
O B:HOH873 2.7 35.7 1.0
O B:ARG433 2.8 44.2 1.0
C B:LYS431 3.1 32.6 1.0
C B:VAL430 3.4 30.5 1.0
CA B:LYS431 3.6 35.6 1.0
C B:ASP427 3.6 25.1 1.0
N B:ARG433 3.6 29.9 1.0
C B:ARG433 3.8 38.4 1.0
N B:LYS431 3.9 32.8 1.0
N B:ALA432 4.0 31.1 1.0
C B:ALA432 4.2 35.3 1.0
CA B:ARG433 4.2 35.3 1.0
CA B:ASP427 4.4 28.0 1.0
CA B:ALA432 4.4 34.9 1.0
CB B:ARG433 4.5 31.2 1.0
CA B:VAL430 4.5 26.4 1.0
N B:VAL430 4.6 24.8 1.0
N B:ARG428 4.6 23.5 1.0
CA B:ARG428 4.7 25.7 1.0
CB B:ASP427 4.9 26.9 1.0
N B:GLY434 4.9 35.4 1.0
C B:ARG428 4.9 24.9 1.0
O B:ALA432 5.0 35.1 1.0

Reference:

N.Maltseva, Y.Kim, S.Shatsman, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Amp and Succinate To Be Published.
Page generated: Mon Aug 12 10:39:31 2024

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