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Potassium in PDB 4c13: X-Ray Crystal Structure of Staphylococcus Aureus Mure with Udp-Murnac-Ala-Glu-Lys

Enzymatic activity of X-Ray Crystal Structure of Staphylococcus Aureus Mure with Udp-Murnac-Ala-Glu-Lys

All present enzymatic activity of X-Ray Crystal Structure of Staphylococcus Aureus Mure with Udp-Murnac-Ala-Glu-Lys:
6.3.2.7;

Protein crystallography data

The structure of X-Ray Crystal Structure of Staphylococcus Aureus Mure with Udp-Murnac-Ala-Glu-Lys, PDB code: 4c13 was solved by K.M.Ruane, D.I.Roper, V.Fulop, H.Barreteau, A.Boniface, S.Dementin, D.Blanot, D.Mengin-Lecreulx, S.Gobec, A.Dessen, C.G.Dowson, A.J.Lloyd, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 78.86 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 157.820, 54.030, 70.970, 90.00, 92.02, 90.00
R / Rfree (%) 19.569 / 24.078

Other elements in 4c13:

The structure of X-Ray Crystal Structure of Staphylococcus Aureus Mure with Udp-Murnac-Ala-Glu-Lys also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the X-Ray Crystal Structure of Staphylococcus Aureus Mure with Udp-Murnac-Ala-Glu-Lys (pdb code 4c13). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the X-Ray Crystal Structure of Staphylococcus Aureus Mure with Udp-Murnac-Ala-Glu-Lys, PDB code: 4c13:

Potassium binding site 1 out of 1 in 4c13

Go back to Potassium Binding Sites List in 4c13
Potassium binding site 1 out of 1 in the X-Ray Crystal Structure of Staphylococcus Aureus Mure with Udp-Murnac-Ala-Glu-Lys


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of X-Ray Crystal Structure of Staphylococcus Aureus Mure with Udp-Murnac-Ala-Glu-Lys within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K605

b:32.7
occ:1.00
 O A:SER100 2.4 19.1 1.0
OD2 A:ASP194 2.5 15.5 1.0
O A:LEU103 2.5 16.7 1.0
OG1 A:THR105 2.7 13.2 1.0
CG A:ASP194 3.4 15.7 1.0
O A:HOH2038 3.5 22.9 1.0
N A:THR105 3.6 13.1 1.0
C A:SER100 3.6 18.9 1.0
C A:LEU103 3.7 18.9 1.0
OD1 A:ASP194 3.7 17.7 1.0
O A:GLU192 3.7 15.7 1.0
CB A:THR105 3.7 13.5 1.0
CG2 A:THR105 3.9 14.6 1.0
C A:VAL104 4.1 13.3 1.0
CA A:VAL104 4.1 14.4 1.0
CA A:THR105 4.3 13.3 1.0
N A:VAL104 4.4 15.9 1.0
CA A:HIS101 4.4 23.2 1.0
C A:GLU192 4.5 13.7 1.0
N A:HIS101 4.5 19.5 1.0
CB A:ASP194 4.6 14.6 1.0
CA A:SER100 4.6 16.9 1.0
C A:HIS101 4.6 23.7 1.0
N A:ASP194 4.6 13.9 1.0
CB A:GLU192 4.7 14.2 1.0
N A:LEU103 4.7 23.1 1.0
O A:HIS101 4.8 22.4 1.0
CA A:LEU103 4.8 20.7 1.0
CB A:SER100 4.9 16.3 1.0
C A:PHE193 4.9 13.9 1.0
CD1 A:LEU103 5.0 23.5 1.0

Reference:

K.M.Ruane, A.J.Lloyd, V.Fulop, C.G.Dowson, H.Barreteau, A.Boniface, S.Dementin, D.Blanot, D.Mengin-Lecreulx, S.Gobec, A.Dessen, D.I.Roper. Specificity Determinants For Lysine Incorporation in Staphylococcus Aureus Peptidoglycan As Revealed By the Structure of A Mure Enzyme Ternary Complex. J.Biol.Chem. V. 288 33439 2013.
ISSN: ISSN 0021-9258
PubMed: 24064214
DOI: 10.1074/JBC.M113.508135
Page generated: Sun Dec 13 23:29:19 2020

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