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Potassium in PDB 4bz0: Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.

Protein crystallography data

The structure of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery., PDB code: 4bz0 was solved by P.Lassaux, B.A.Manjasetty, O.Conchillo-Sole, D.Yero, L.Gourlay, L.Perletti, X.Daura, H.Belrhali, M.Bolognesi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.04 / 1.76
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 52.740, 52.740, 127.020, 90.00, 90.00, 90.00
R / Rfree (%) 19.105 / 25.043

Potassium Binding Sites:

The binding sites of Potassium atom in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. (pdb code 4bz0). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery., PDB code: 4bz0:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 1 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1188

b:18.8
occ:0.50
 OE1 A:GLN20 2.7 18.4 1.0
O A:TRP19 2.7 14.6 1.0
K A:K1190 2.8 20.4 0.5
K A:K1193 2.8 26.5 0.5
CG A:PRO119 3.7 17.1 1.0
CA A:GLN20 3.7 12.8 1.0
CD A:GLN20 3.7 16.8 1.0
CB A:PRO119 3.7 17.1 1.0
CZ A:PHE18 3.7 20.7 1.0
C A:TRP19 3.8 13.2 1.0
CE2 A:PHE18 3.8 21.8 1.0
CB A:GLN20 4.1 14.9 1.0
N A:GLN20 4.2 13.7 1.0
CA A:PRO119 4.3 15.9 1.0
CG A:GLN20 4.4 14.8 1.0
CE1 A:PHE18 4.6 27.1 1.0
NE2 A:GLN20 4.6 19.2 1.0
N A:SER21 4.7 14.9 0.5
N A:SER21 4.7 15.1 0.5
CD2 A:PHE18 4.8 20.4 1.0
C A:GLN20 4.8 14.9 1.0
CD A:PRO119 4.8 16.3 1.0
K A:K1192 4.9 27.1 0.5

Potassium binding site 2 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 2 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1189

b:28.2
occ:0.50
 O A:HOH2053 2.6 23.3 1.0
N A:ASN120 3.2 15.4 1.0
O A:HOH2064 3.4 19.3 1.0
C A:ASN120 3.6 17.6 1.0
CA A:ASN120 3.6 18.6 1.0
CB A:MET118 3.6 16.1 1.0
CB A:ASN120 3.7 21.2 1.0
N A:GLY121 3.8 17.2 1.0
N A:PRO119 4.0 15.9 1.0
O A:ASN120 4.0 25.2 1.0
CD A:PRO119 4.1 16.3 1.0
CE A:MET118 4.2 26.6 1.0
C A:MET118 4.2 15.4 1.0
C A:PRO119 4.3 14.5 1.0
CA A:GLY121 4.5 15.9 1.0
SD A:MET118 4.5 27.2 1.0
CA A:PRO119 4.5 15.9 1.0
CA A:MET118 4.5 17.4 1.0
CB A:PRO119 4.6 17.1 1.0
CG A:ASN120 4.6 28.3 1.0
O A:MET118 4.7 16.1 1.0
CG A:MET118 4.7 19.7 1.0
CG A:PRO119 4.8 17.1 1.0
OD1 A:ASP137 5.0 25.6 1.0

Potassium binding site 3 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 3 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1190

b:20.4
occ:0.50
 K A:K1192 2.7 27.1 0.5
K A:K1188 2.8 18.8 0.5
CG A:PRO119 3.7 17.1 1.0
CB A:PRO119 3.8 17.1 1.0
CZ A:PHE18 3.8 20.7 1.0
OE1 A:GLN20 4.4 18.4 1.0
CE1 A:PHE18 4.4 27.1 1.0
CE2 A:PHE18 4.7 21.8 1.0
K A:K1193 4.7 26.5 0.5

Potassium binding site 4 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 4 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1191

b:22.4
occ:0.50
 OD2 A:ASP122 2.5 25.4 1.0
OG A:SER70 2.8 16.9 1.0
O A:VAL14 2.9 22.2 1.0
N A:GLY72 3.2 18.5 1.0
CG A:ASP122 3.3 21.3 1.0
OD1 A:ASP122 3.3 23.2 1.0
N A:LEU71 3.5 21.2 1.0
CB A:SER70 3.7 15.2 1.0
CA A:SER70 3.7 15.8 1.0
CG A:LEU17 3.7 17.4 1.0
CA A:GLY72 3.8 20.1 1.0
C A:SER70 3.9 17.1 1.0
CA A:GLY15 3.9 20.8 1.0
C A:VAL14 3.9 22.1 1.0
CD1 A:LEU17 4.0 16.9 1.0
C A:LEU71 4.2 18.0 1.0
CA A:LEU71 4.2 19.2 1.0
N A:GLY15 4.4 24.7 1.0
CB A:LEU17 4.5 18.1 1.0
C A:GLY15 4.5 22.9 1.0
CB A:LEU71 4.5 19.8 1.0
N A:ALA73 4.5 24.0 1.0
N A:GLY16 4.6 19.9 1.0
CZ2 A:TRP19 4.7 18.4 1.0
CB A:ASP122 4.7 21.1 1.0
C A:GLY72 4.7 20.7 1.0
CD2 A:LEU17 4.7 19.9 1.0
N A:LEU17 4.8 16.8 1.0
O A:SER70 4.8 19.7 1.0
NE1 A:TRP19 4.8 16.9 1.0

Potassium binding site 5 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 5 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1192

b:27.1
occ:0.50
 K A:K1190 2.7 20.4 0.5
CE1 A:PHE18 3.5 27.1 1.0
CZ A:PHE18 3.7 20.7 1.0
CB A:PRO119 4.1 17.1 1.0
CG A:PRO119 4.6 17.1 1.0
CD1 A:PHE18 4.7 20.8 1.0
O A:HOH2055 4.8 47.3 1.0
K A:K1188 4.9 18.8 0.5

Potassium binding site 6 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 6 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1193

b:26.5
occ:0.50
 O A:HOH2016 2.7 46.2 1.0
K A:K1188 2.8 18.8 0.5
N A:SER21 3.1 14.9 0.5
N A:SER21 3.1 15.1 0.5
OG A:SER21 3.5 21.5 0.5
CA A:GLN20 3.7 12.8 1.0
O A:TRP19 3.8 14.6 1.0
CB A:SER21 3.9 17.8 0.5
C A:GLN20 3.9 14.9 1.0
OE1 A:GLN20 4.0 18.4 1.0
CA A:SER21 4.0 14.6 0.5
CA A:SER21 4.1 14.6 0.5
CB A:SER21 4.1 18.6 0.5
CD A:GLN20 4.2 16.8 1.0
OG A:SER21 4.3 17.9 0.5
CG A:PRO119 4.5 17.1 1.0
C A:TRP19 4.6 13.2 1.0
N A:GLN20 4.6 13.7 1.0
O A:SER21 4.6 14.3 0.5
O A:SER21 4.6 14.3 0.5
CB A:GLN20 4.7 14.9 1.0
CG A:GLN20 4.7 14.8 1.0
NE2 A:GLN20 4.7 19.2 1.0
K A:K1190 4.7 20.4 0.5
C A:SER21 4.9 16.0 0.5
C A:SER21 4.9 16.0 0.5

Potassium binding site 7 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 7 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1194

b:67.6
occ:1.00
 O A:GLY141 3.1 26.8 1.0
CZ A:ARG113 3.2 21.3 1.0
NH2 A:ARG113 3.2 27.2 1.0
NH1 A:ARG113 3.3 28.1 1.0
NE A:ARG113 3.7 18.3 1.0
CB A:TRP140 3.9 19.0 1.0
O A:TRP140 4.1 24.8 1.0
C A:GLY141 4.2 25.2 1.0
O A:HOH2050 4.3 35.6 1.0
C A:TRP140 4.4 21.3 1.0
CD A:ARG113 4.5 16.5 1.0
CE3 A:TRP140 4.8 19.1 1.0
CA A:TRP140 4.9 18.5 1.0
CG A:TRP140 4.9 19.1 1.0
CA A:GLY142 4.9 21.8 1.0
N A:GLY141 4.9 23.2 1.0
N A:GLY142 4.9 24.4 1.0

Reference:

P.Lassaux, O.Conchillo-Sole, B.A.Manjasetty, D.Yero, L.Perletti, H.Belrhali, X.Daura, L.J.Gourlay, M.Bolognesi. Redefining the PF06864 Pfam Family Based on Burkholderia Pseudomallei PILO2BP S-Sad Crystal Structure. Plos One V. 9 94981 2014.
ISSN: ISSN 1932-6203
PubMed: 24728008
DOI: 10.1371/JOURNAL.PONE.0094981
Page generated: Mon Aug 12 10:14:17 2024

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