Atomistry » Potassium » PDB 4bga-4cn0 » 4bz0
Atomistry »
  Potassium »
    PDB 4bga-4cn0 »
      4bz0 »

Potassium in PDB 4bz0: Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.

Protein crystallography data

The structure of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery., PDB code: 4bz0 was solved by P.Lassaux, B.A.Manjasetty, O.Conchillo-Sole, D.Yero, L.Gourlay, L.Perletti, X.Daura, H.Belrhali, M.Bolognesi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.04 / 1.76
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 52.740, 52.740, 127.020, 90.00, 90.00, 90.00
R / Rfree (%) 19.105 / 25.043

Potassium Binding Sites:

The binding sites of Potassium atom in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. (pdb code 4bz0). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery., PDB code: 4bz0:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 1 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1188

b:18.8
occ:0.50
 OE1 A:GLN20 2.7 18.4 1.0
O A:TRP19 2.7 14.6 1.0
K A:K1190 2.8 20.4 0.5
K A:K1193 2.8 26.5 0.5
CG A:PRO119 3.7 17.1 1.0
CA A:GLN20 3.7 12.8 1.0
CD A:GLN20 3.7 16.8 1.0
CB A:PRO119 3.7 17.1 1.0
CZ A:PHE18 3.7 20.7 1.0
C A:TRP19 3.8 13.2 1.0
CE2 A:PHE18 3.8 21.8 1.0
CB A:GLN20 4.1 14.9 1.0
N A:GLN20 4.2 13.7 1.0
CA A:PRO119 4.3 15.9 1.0
CG A:GLN20 4.4 14.8 1.0
CE1 A:PHE18 4.6 27.1 1.0
NE2 A:GLN20 4.6 19.2 1.0
N A:SER21 4.7 14.9 0.5
N A:SER21 4.7 15.1 0.5
CD2 A:PHE18 4.8 20.4 1.0
C A:GLN20 4.8 14.9 1.0
CD A:PRO119 4.8 16.3 1.0
K A:K1192 4.9 27.1 0.5

Potassium binding site 2 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 2 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1189

b:28.2
occ:0.50
 O A:HOH2053 2.6 23.3 1.0
N A:ASN120 3.2 15.4 1.0
O A:HOH2064 3.4 19.3 1.0
C A:ASN120 3.6 17.6 1.0
CA A:ASN120 3.6 18.6 1.0
CB A:MET118 3.6 16.1 1.0
CB A:ASN120 3.7 21.2 1.0
N A:GLY121 3.8 17.2 1.0
N A:PRO119 4.0 15.9 1.0
O A:ASN120 4.0 25.2 1.0
CD A:PRO119 4.1 16.3 1.0
CE A:MET118 4.2 26.6 1.0
C A:MET118 4.2 15.4 1.0
C A:PRO119 4.3 14.5 1.0
CA A:GLY121 4.5 15.9 1.0
SD A:MET118 4.5 27.2 1.0
CA A:PRO119 4.5 15.9 1.0
CA A:MET118 4.5 17.4 1.0
CB A:PRO119 4.6 17.1 1.0
CG A:ASN120 4.6 28.3 1.0
O A:MET118 4.7 16.1 1.0
CG A:MET118 4.7 19.7 1.0
CG A:PRO119 4.8 17.1 1.0
OD1 A:ASP137 5.0 25.6 1.0

Potassium binding site 3 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 3 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1190

b:20.4
occ:0.50
 K A:K1192 2.7 27.1 0.5
K A:K1188 2.8 18.8 0.5
CG A:PRO119 3.7 17.1 1.0
CB A:PRO119 3.8 17.1 1.0
CZ A:PHE18 3.8 20.7 1.0
OE1 A:GLN20 4.4 18.4 1.0
CE1 A:PHE18 4.4 27.1 1.0
CE2 A:PHE18 4.7 21.8 1.0
K A:K1193 4.7 26.5 0.5

Potassium binding site 4 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 4 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1191

b:22.4
occ:0.50
 OD2 A:ASP122 2.5 25.4 1.0
OG A:SER70 2.8 16.9 1.0
O A:VAL14 2.9 22.2 1.0
N A:GLY72 3.2 18.5 1.0
CG A:ASP122 3.3 21.3 1.0
OD1 A:ASP122 3.3 23.2 1.0
N A:LEU71 3.5 21.2 1.0
CB A:SER70 3.7 15.2 1.0
CA A:SER70 3.7 15.8 1.0
CG A:LEU17 3.7 17.4 1.0
CA A:GLY72 3.8 20.1 1.0
C A:SER70 3.9 17.1 1.0
CA A:GLY15 3.9 20.8 1.0
C A:VAL14 3.9 22.1 1.0
CD1 A:LEU17 4.0 16.9 1.0
C A:LEU71 4.2 18.0 1.0
CA A:LEU71 4.2 19.2 1.0
N A:GLY15 4.4 24.7 1.0
CB A:LEU17 4.5 18.1 1.0
C A:GLY15 4.5 22.9 1.0
CB A:LEU71 4.5 19.8 1.0
N A:ALA73 4.5 24.0 1.0
N A:GLY16 4.6 19.9 1.0
CZ2 A:TRP19 4.7 18.4 1.0
CB A:ASP122 4.7 21.1 1.0
C A:GLY72 4.7 20.7 1.0
CD2 A:LEU17 4.7 19.9 1.0
N A:LEU17 4.8 16.8 1.0
O A:SER70 4.8 19.7 1.0
NE1 A:TRP19 4.8 16.9 1.0

Potassium binding site 5 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 5 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1192

b:27.1
occ:0.50
 K A:K1190 2.7 20.4 0.5
CE1 A:PHE18 3.5 27.1 1.0
CZ A:PHE18 3.7 20.7 1.0
CB A:PRO119 4.1 17.1 1.0
CG A:PRO119 4.6 17.1 1.0
CD1 A:PHE18 4.7 20.8 1.0
O A:HOH2055 4.8 47.3 1.0
K A:K1188 4.9 18.8 0.5

Potassium binding site 6 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 6 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1193

b:26.5
occ:0.50
 O A:HOH2016 2.7 46.2 1.0
K A:K1188 2.8 18.8 0.5
N A:SER21 3.1 14.9 0.5
N A:SER21 3.1 15.1 0.5
OG A:SER21 3.5 21.5 0.5
CA A:GLN20 3.7 12.8 1.0
O A:TRP19 3.8 14.6 1.0
CB A:SER21 3.9 17.8 0.5
C A:GLN20 3.9 14.9 1.0
OE1 A:GLN20 4.0 18.4 1.0
CA A:SER21 4.0 14.6 0.5
CA A:SER21 4.1 14.6 0.5
CB A:SER21 4.1 18.6 0.5
CD A:GLN20 4.2 16.8 1.0
OG A:SER21 4.3 17.9 0.5
CG A:PRO119 4.5 17.1 1.0
C A:TRP19 4.6 13.2 1.0
N A:GLN20 4.6 13.7 1.0
O A:SER21 4.6 14.3 0.5
O A:SER21 4.6 14.3 0.5
CB A:GLN20 4.7 14.9 1.0
CG A:GLN20 4.7 14.8 1.0
NE2 A:GLN20 4.7 19.2 1.0
K A:K1190 4.7 20.4 0.5
C A:SER21 4.9 16.0 0.5
C A:SER21 4.9 16.0 0.5

Potassium binding site 7 out of 7 in 4bz0

Go back to Potassium Binding Sites List in 4bz0
Potassium binding site 7 out of 7 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64-Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1194

b:67.6
occ:1.00
 O A:GLY141 3.1 26.8 1.0
CZ A:ARG113 3.2 21.3 1.0
NH2 A:ARG113 3.2 27.2 1.0
NH1 A:ARG113 3.3 28.1 1.0
NE A:ARG113 3.7 18.3 1.0
CB A:TRP140 3.9 19.0 1.0
O A:TRP140 4.1 24.8 1.0
C A:GLY141 4.2 25.2 1.0
O A:HOH2050 4.3 35.6 1.0
C A:TRP140 4.4 21.3 1.0
CD A:ARG113 4.5 16.5 1.0
CE3 A:TRP140 4.8 19.1 1.0
CA A:TRP140 4.9 18.5 1.0
CG A:TRP140 4.9 19.1 1.0
CA A:GLY142 4.9 21.8 1.0
N A:GLY141 4.9 23.2 1.0
N A:GLY142 4.9 24.4 1.0

Reference:

P.Lassaux, O.Conchillo-Sole, B.A.Manjasetty, D.Yero, L.Perletti, H.Belrhali, X.Daura, L.J.Gourlay, M.Bolognesi. Redefining the PF06864 Pfam Family Based on Burkholderia Pseudomallei PILO2BP S-Sad Crystal Structure. Plos One V. 9 94981 2014.
ISSN: ISSN 1932-6203
PubMed: 24728008
DOI: 10.1371/JOURNAL.PONE.0094981
Page generated: Mon Aug 12 10:14:17 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy