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Potassium in PDB 4byz: Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery.

Protein crystallography data

The structure of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery., PDB code: 4byz was solved by P.Lassaux, B.A.Manjasetty, O.Conchillo-Sole, D.Yero, L.Gourlay, L.Perletti, X.Daura, H.Belrhali, M.Bolognesi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.03 / 1.55
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.042, 56.042, 117.000, 90.00, 90.00, 90.00
R / Rfree (%) 14.961 / 19.844

Potassium Binding Sites:

The binding sites of Potassium atom in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery. (pdb code 4byz). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery., PDB code: 4byz:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 4byz

Go back to Potassium Binding Sites List in 4byz
Potassium binding site 1 out of 5 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1194

b:15.1
occ:0.50
 O A:HOH2045 2.7 14.8 1.0
O A:TRP19 2.7 10.0 1.0
OE1 A:GLN20 2.8 10.3 1.0
CA A:GLN20 3.6 10.8 1.0
CD A:GLN20 3.6 10.0 1.0
CZ A:PHE18 3.7 10.9 1.0
CG A:PRO119 3.7 10.0 1.0
C A:TRP19 3.7 8.9 1.0
CE2 A:PHE18 3.8 10.2 1.0
CB A:PRO119 3.8 8.8 1.0
O A:HOH2044 4.0 27.0 1.0
CB A:GLN20 4.1 10.4 1.0
N A:GLN20 4.1 10.4 1.0
CA A:PRO119 4.4 9.1 1.0
CG A:GLN20 4.4 10.0 1.0
NE2 A:GLN20 4.5 11.4 1.0
CE1 A:PHE18 4.5 11.9 1.0
N A:SER21 4.6 13.0 1.0
C A:GLN20 4.7 11.5 1.0
CD2 A:PHE18 4.8 10.3 1.0
CD A:PRO119 4.9 9.3 1.0

Potassium binding site 2 out of 5 in 4byz

Go back to Potassium Binding Sites List in 4byz
Potassium binding site 2 out of 5 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1195

b:15.5
occ:0.50
 O A:HIS115 2.8 11.5 1.0
O A:HOH2097 2.8 11.4 1.0
O A:HOH2084 2.9 13.1 1.0
NH2 A:ARG47 3.1 10.2 1.0
OG A:SER76 3.1 14.1 1.0
O A:HOH2098 3.7 19.5 1.0
C A:HIS115 3.7 10.7 1.0
CB A:HIS115 3.7 11.5 1.0
O A:SER76 3.7 10.5 1.0
CA A:HIS115 3.9 10.6 1.0
CB A:ALA80 4.0 14.9 1.0
CZ A:ARG47 4.0 10.5 1.0
O A:HOH2118 4.1 13.8 1.0
CG1 A:VAL52 4.2 14.2 1.0
ND1 A:HIS115 4.2 11.8 1.0
NE A:ARG47 4.3 10.2 1.0
C A:SER76 4.3 9.8 1.0
CG A:HIS115 4.4 11.9 1.0
CB A:SER76 4.4 10.8 1.0
CB A:VAL52 4.6 13.9 1.0
CA A:SER76 4.7 10.2 1.0
CA A:ALA80 4.8 14.0 1.0
OD2 A:ASP49 4.8 13.1 1.0
N A:ALA116 4.9 11.2 1.0
N A:ALA80 4.9 12.6 1.0
CG1 A:VAL112 5.0 10.0 1.0

Potassium binding site 3 out of 5 in 4byz

Go back to Potassium Binding Sites List in 4byz
Potassium binding site 3 out of 5 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1196

b:16.9
occ:0.50
 O A:SER23 2.7 14.9 1.0
C A:SER23 3.7 14.1 1.0
CA A:SER23 3.9 13.0 1.0
CB A:SER23 4.2 14.2 1.0
CG A:ARG25 4.7 23.2 0.5
CG A:ARG25 4.7 22.9 0.5
N A:ARG24 4.9 15.1 1.0

Potassium binding site 4 out of 5 in 4byz

Go back to Potassium Binding Sites List in 4byz
Potassium binding site 4 out of 5 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1197

b:13.4
occ:0.50
 OD2 A:ASP122 2.6 10.1 1.0
OG A:SER70 2.8 9.4 1.0
O A:VAL14 2.9 11.0 1.0
N A:GLY72 3.0 9.0 1.0
N A:LEU71 3.3 9.1 1.0
CG A:ASP122 3.4 10.0 1.0
OD1 A:ASP122 3.5 11.0 1.0
CA A:SER70 3.7 8.7 1.0
CB A:SER70 3.7 8.7 1.0
CA A:GLY72 3.7 9.0 1.0
C A:SER70 3.7 9.2 1.0
CG A:LEU17 3.7 10.8 1.0
CA A:GLY15 3.9 9.9 1.0
CD1 A:LEU17 3.9 11.7 1.0
C A:VAL14 3.9 10.6 1.0
C A:LEU71 4.0 8.7 1.0
CA A:LEU71 4.1 9.7 1.0
N A:GLY15 4.4 10.7 1.0
CB A:LEU71 4.4 10.0 1.0
C A:GLY15 4.5 10.4 1.0
N A:ALA73 4.5 9.1 1.0
CB A:LEU17 4.5 9.5 1.0
N A:GLY16 4.6 9.2 1.0
O A:SER70 4.6 10.3 1.0
C A:GLY72 4.6 9.0 1.0
CD2 A:LEU17 4.7 13.2 1.0
CZ2 A:TRP19 4.7 9.0 1.0
N A:LEU17 4.7 9.8 1.0
CB A:ASP122 4.8 9.2 1.0
NE1 A:TRP19 4.8 9.0 1.0

Potassium binding site 5 out of 5 in 4byz

Go back to Potassium Binding Sites List in 4byz
Potassium binding site 5 out of 5 in the Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structural Characterization Using Sulfur-Sad of the Cytoplasmic Domain of Burkholderia Pseudomallei PILO2BP, An Actin-Like Protein Component of A Type Ivb R64- Derivative Pilus Machinery. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1198

b:16.0
occ:0.50
 O A:SER21 2.7 13.1 1.0
O A:HOH2070 2.8 14.1 1.0
NE2 A:GLN20 3.1 11.4 1.0
C A:SER21 3.9 12.6 1.0
CD1 A:LEU35 3.9 12.6 1.0
CD A:GLN20 4.1 10.0 1.0
CA A:LEU22 4.2 11.4 1.0
CG A:GLN20 4.3 10.0 1.0
OE2 A:GLU31 4.3 14.6 1.0
C A:LEU22 4.5 11.9 1.0
N A:LEU22 4.5 12.6 1.0
N A:SER23 4.5 12.2 1.0
OG A:SER21 4.5 16.1 0.2
CD2 A:LEU35 4.8 14.1 1.0

Reference:

P.Lassaux, O.Conchillo-Sole, B.A.Manjasetty, D.Yero, L.Perletti, H.Belrhali, X.Daura, L.J.Gourlay, M.Bolognesi. Redefining the PF06864 Pfam Family Based on Burkholderia Pseudomallei PILO2BP S-Sad Crystal Structure. Plos One V. 9 94981 2014.
ISSN: ISSN 1932-6203
PubMed: 24728008
DOI: 10.1371/JOURNAL.PONE.0094981
Page generated: Mon Aug 12 10:14:00 2024

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