Potassium in PDB 1mji: Detailed Analysis of Rna-Protein Interactions Within the Bacterial Ribosomal Protein L5/5S Rrna Complex

The structure of Detailed Analysis of Rna-Protein Interactions Within the Bacterial Ribosomal Protein L5/5S Rrna Complex, PDB code: 1mji was solved by A.Perederina, N.Nevskaya, O.Nikonov, A.Nikulin, P.Dumas, M.Yao, I.Tanaka, M.Garber, G.Gongadze, S.Nikonov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.91 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.890, 99.600, 65.730, 90.00, 100.05, 90.00
R / Rfree (%)	21 / 28.8

The structure of Detailed Analysis of Rna-Protein Interactions Within the Bacterial Ribosomal Protein L5/5S Rrna Complex also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Potassium atom in the Detailed Analysis of Rna-Protein Interactions Within the Bacterial Ribosomal Protein L5/5S Rrna Complex (pdb code 1mji). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Detailed Analysis of Rna-Protein Interactions Within the Bacterial Ribosomal Protein L5/5S Rrna Complex, PDB code: 1mji:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the Detailed Analysis of Rna-Protein Interactions Within the Bacterial Ribosomal Protein L5/5S Rrna Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Detailed Analysis of Rna-Protein Interactions Within the Bacterial Ribosomal Protein L5/5S Rrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:K206 b:47.1 occ:1.00 O C:HOH221 3.3 35.1 1.0 O6 C:G33 3.7 24.1 1.0 O4 C:U32 3.8 17.7 1.0 N7 C:G33 4.0 23.6 1.0 C4 C:U32 4.2 17.0 1.0 OP2 C:A46 4.2 16.7 1.0 C5 C:U32 4.4 17.6 1.0 OP2 C:A45 4.4 17.9 1.0 C6 C:G33 4.5 22.3 1.0 C5 C:G33 4.6 23.2 1.0 O C:HOH219 4.7 15.6 1.0 O2' C:G44 4.9 27.6 1.0

Potassium binding site 2 out of 2 in the Detailed Analysis of Rna-Protein Interactions Within the Bacterial Ribosomal Protein L5/5S Rrna Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Detailed Analysis of Rna-Protein Interactions Within the Bacterial Ribosomal Protein L5/5S Rrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:K205 b:51.9 occ:1.00 O D:HOH221 2.3 25.4 1.0 O4 D:U32 3.4 19.0 1.0 O6 D:G33 3.9 20.6 1.0 C4 D:U32 3.9 17.7 1.0 C5 D:U32 4.0 17.7 1.0 N7 D:G33 4.1 19.3 1.0 C6 D:G33 4.7 18.9 1.0 OP2 D:A46 4.7 18.8 1.0 C5 D:G33 4.8 16.8 1.0

A.Perederina, N.Nevskaya, O.Nikonov, A.Nikulin, P.Dumas, M.Yao, I.Tanaka, M.Garber, G.Gongadze, S.Nikonov. Detailed Analysis of Rna-Protein Interactions Within the Bacterial Ribosomal Protein L5/5S Rrna Complex Rna V. 8 1548 2002.
ISSN: ISSN 1355-8382
PubMed: 12515387