Potassium in PDB 8x9o: Cte-U537INS-Branching,Ca,Inactive

The structure of Cte-U537INS-Branching,Ca,Inactive also contains other interesting chemical elements:

Calcium

(Ca)

14 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 19;

Binding sites:

The binding sites of Potassium atom in the Cte-U537INS-Branching,Ca,Inactive (pdb code 8x9o). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 19 binding sites of Potassium where determined in the Cte-U537INS-Branching,Ca,Inactive, PDB code: 8x9o:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 19 in the Cte-U537INS-Branching,Ca,Inactive


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cte-U537INS-Branching,Ca,Inactive within 5.0Å range: probe atom residue distance (Å) B Occ A:K915 b:74.8 occ:1.00 OP2 A:G86 2.6 66.7 1.0 N7 A:G83 3.1 72.0 1.0 O6 A:G83 3.2 78.3 1.0 O4' A:G697 3.2 71.9 1.0 O5' A:G697 3.3 81.1 1.0 C5 A:G83 3.8 67.9 1.0 C6 A:G83 3.8 69.8 1.0 OP1 A:G697 3.9 83.8 1.0 P A:G86 3.9 82.2 1.0 C4' A:G697 4.0 69.4 1.0 C5' A:G697 4.0 66.4 1.0 C8 A:G83 4.2 68.8 1.0 C1' A:G697 4.3 68.2 1.0 P A:G697 4.3 96.0 1.0 OP1 A:C85 4.4 74.2 1.0 OP1 A:G86 4.4 77.4 1.0 OP2 A:C85 4.6 79.2 1.0 N9 A:G697 4.7 66.9 1.0 O5' A:G86 4.7 73.8 1.0 C8 A:G697 4.8 74.0 1.0 P A:C85 4.8 77.8 1.0 O5' A:C85 4.9 62.9 1.0 O3' A:A696 4.9 81.2 1.0

Potassium binding site 2 out of 19 in the Cte-U537INS-Branching,Ca,Inactive


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cte-U537INS-Branching,Ca,Inactive within 5.0Å range: probe atom residue distance (Å) B Occ A:K916 b:57.5 occ:1.00 OP2 A:A558 2.7 77.4 1.0 O4 A:U559 2.8 84.2 1.0 C4 A:U559 3.7 81.8 1.0 N3 A:U559 3.9 80.9 1.0 P A:A558 4.1 90.5 1.0 O5' A:A557 4.5 81.7 1.0 N1 A:A567 4.5 76.5 1.0 N6 A:A566 4.5 79.8 1.0 OP1 A:A558 4.9 83.4 1.0 OP1 A:A557 4.9 79.5 1.0 O3' A:A557 4.9 72.0 1.0 C3' A:A557 4.9 70.5 1.0 C2 A:A567 4.9 80.9 1.0 OP2 A:A557 5.0 73.3 1.0 P A:A557 5.0 82.5 1.0

Potassium binding site 3 out of 19 in the Cte-U537INS-Branching,Ca,Inactive


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cte-U537INS-Branching,Ca,Inactive within 5.0Å range: probe atom residue distance (Å) B Occ A:K917 b:59.4 occ:1.00 OP1 A:A696 2.7 84.8 1.0 OP2 A:G224 2.8 65.5 1.0 P A:A696 4.1 88.7 1.0 N7 A:G224 4.1 65.9 1.0 C8 A:G224 4.1 70.4 1.0 P A:G224 4.2 78.4 1.0 OP2 A:C223 4.2 70.7 1.0 O4 A:U82 4.4 93.4 1.0 O5' A:A696 4.4 76.5 1.0 OP1 A:C223 4.6 71.2 1.0 O5' A:G224 4.6 69.1 1.0 P A:C223 4.7 78.9 1.0 C3' A:G695 4.7 68.4 1.0 O5' A:C223 4.8 61.5 1.0 O3' A:G695 4.9 73.2 1.0

Potassium binding site 4 out of 19 in the Cte-U537INS-Branching,Ca,Inactive


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cte-U537INS-Branching,Ca,Inactive within 5.0Å range: probe atom residue distance (Å) B Occ A:K918 b:95.4 occ:1.00 O3' A:C809 2.6 85.8 1.0 OP2 A:A95 2.9 88.0 1.0 C3' A:C809 3.5 81.0 1.0 O2' A:C809 4.1 93.7 1.0 P A:A95 4.2 91.2 1.0 C2' A:C809 4.4 85.2 1.0 N7 A:A95 4.6 76.7 1.0 O5' A:A95 4.7 78.6 1.0 C4' A:C809 4.8 81.5 1.0 C8 A:A95 4.8 77.2 1.0

Potassium binding site 5 out of 19 in the Cte-U537INS-Branching,Ca,Inactive


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cte-U537INS-Branching,Ca,Inactive within 5.0Å range: probe atom residue distance (Å) B Occ A:K919 b:72.5 occ:1.00 O2' A:U436 2.7 84.1 1.0 O2' A:G459 2.8 74.2 1.0 O3' A:U436 3.3 71.5 1.0 OP2 A:A437 3.4 63.7 1.0 N3 A:G459 3.5 61.3 1.0 C2' A:U436 3.9 71.5 1.0 P A:A437 3.9 73.6 1.0 C2' A:G459 4.0 59.5 1.0 C3' A:U436 4.0 68.0 1.0 N2 A:G459 4.1 64.0 1.0 C2 A:G459 4.1 55.2 1.0 C1' A:G459 4.1 62.5 1.0 C4 A:G459 4.3 60.4 1.0 O3' A:G459 4.3 57.8 1.0 OP2 A:U458 4.5 72.8 1.0 OP1 A:A437 4.5 76.3 1.0 N9 A:G459 4.5 56.9 1.0 C5 A:U458 4.6 61.9 1.0 OP2 A:C457 4.6 71.8 1.0 C1' A:U436 4.8 69.0 1.0 C3' A:G459 4.8 54.7 1.0

Potassium binding site 6 out of 19 in the Cte-U537INS-Branching,Ca,Inactive


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cte-U537INS-Branching,Ca,Inactive within 5.0Å range: probe atom residue distance (Å) B Occ A:K920 b:99.1 occ:1.00 OP2 A:A60 2.7 72.6 1.0 O5' A:G83 2.7 72.1 1.0 O4' A:G83 3.0 66.0 1.0 O6 A:G697 3.0 79.3 1.0 N7 A:G697 3.2 74.4 1.0 C5' A:G83 3.6 69.2 1.0 OP1 A:G83 3.6 72.9 1.0 P A:A60 3.6 76.8 1.0 C4' A:G83 3.7 68.0 1.0 C6 A:G697 3.7 67.2 1.0 P A:G83 3.8 82.0 1.0 C5 A:G697 3.8 66.3 1.0 OP1 A:A60 4.0 72.8 1.0 O5' A:A60 4.1 64.5 1.0 C1' A:G83 4.2 71.0 1.0 O3' A:U82 4.4 74.1 1.0 C8 A:G697 4.4 74.0 1.0 O5' A:G61 4.4 68.9 1.0 N6 A:A698 4.4 77.9 1.0 C8 A:G83 4.5 68.8 1.0 OP2 A:G61 4.6 76.5 1.0 N9 A:G83 4.7 68.6 1.0 O2' A:U82 4.8 82.7 1.0 N1 A:A698 4.9 64.7 1.0 C6 A:A698 4.9 67.7 1.0 OP2 A:G83 5.0 82.4 1.0

Potassium binding site 7 out of 19 in the Cte-U537INS-Branching,Ca,Inactive


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cte-U537INS-Branching,Ca,Inactive within 5.0Å range: probe atom residue distance (Å) B Occ A:K921 b:79.3 occ:1.00 O6 A:G737 2.6 85.0 1.0 OP2 A:G728 2.7 82.9 1.0 C6 A:G737 3.8 87.0 1.0 OP1 A:C727 4.1 92.9 1.0 P A:G728 4.1 94.2 1.0 O5' A:C727 4.2 83.3 1.0 P A:C727 4.5 98.5 1.0 OP2 A:C727 4.7 92.4 1.0 O5' A:G728 4.7 77.8 1.0 C5 A:G737 4.7 84.8 1.0 N7 A:G737 4.8 88.9 1.0 N1 A:G737 4.8 85.9 1.0 C5' A:C727 4.8 82.0 1.0 O3' A:C727 5.0 90.9 1.0

Potassium binding site 8 out of 19 in the Cte-U537INS-Branching,Ca,Inactive


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Cte-U537INS-Branching,Ca,Inactive within 5.0Å range: probe atom residue distance (Å) B Occ A:K922 b:60.4 occ:1.00 N2 A:G372 3.4 84.0 1.0 N1 A:G372 3.5 74.6 1.0 C2 A:G372 4.0 78.6 1.0 O6 A:G373 4.3 87.8 1.0 C6 A:G372 4.6 69.2 1.0 OP2 A:G370 4.6 76.5 1.0 OP2 A:C371 4.6 75.3 1.0 O6 A:G372 4.7 67.2 1.0

Potassium binding site 9 out of 19 in the Cte-U537INS-Branching,Ca,Inactive


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Cte-U537INS-Branching,Ca,Inactive within 5.0Å range: probe atom residue distance (Å) B Occ A:K923 b:65.3 occ:1.00 O6 A:G693 2.7 79.8 1.0 C6 A:G693 3.8 71.1 1.0 N7 A:G693 4.5 64.8 1.0 OP2 A:G692 4.5 66.6 1.0 N1 A:G694 4.5 57.2 1.0 OP2 A:G691 4.5 74.8 1.0 C5 A:G693 4.5 65.0 1.0 O6 A:G694 4.6 75.3 1.0 N1 A:G693 4.9 60.1 1.0 N7 A:G692 4.9 70.0 1.0

Potassium binding site 10 out of 19 in the Cte-U537INS-Branching,Ca,Inactive


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Cte-U537INS-Branching,Ca,Inactive within 5.0Å range: probe atom residue distance (Å) B Occ A:K924 b:71.0 occ:1.00 O4 A:U67 2.7 74.3 1.0 C4 A:U67 3.8 67.5 1.0 C5 A:U67 4.5 68.3 1.0 O6 A:G66 4.9 78.1 1.0 N3 A:U67 4.9 69.6 1.0

X.Ling, Y.Yao, J.Ma. Structures of A Natural Circularly Permuted Group II Intron Reveal Mechanisms of Branching and Backsplicing. Nat.Struct.Mol.Biol. 2025.
ISSN: ESSN 1545-9985
PubMed: 40016344
DOI: 10.1038/S41594-025-01489-6