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Potassium in PDB 8ofd: Crystal Structure of Beta-Conglutin From Lupinus Albus Refined to 2.81 A

Protein crystallography data

The structure of Crystal Structure of Beta-Conglutin From Lupinus Albus Refined to 2.81 A, PDB code: 8ofd was solved by R.M.Dolot, C.K.O'sullivan, M.Jauset-Rubio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.77 / 2.81
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 166.63, 166.63, 40.098, 90, 90, 120
R / Rfree (%) 20.4 / 27.7

Other elements in 8ofd:

The structure of Crystal Structure of Beta-Conglutin From Lupinus Albus Refined to 2.81 A also contains other interesting chemical elements:

Sodium (Na) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Beta-Conglutin From Lupinus Albus Refined to 2.81 A (pdb code 8ofd). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Beta-Conglutin From Lupinus Albus Refined to 2.81 A, PDB code: 8ofd:

Potassium binding site 1 out of 1 in 8ofd

Go back to Potassium Binding Sites List in 8ofd
Potassium binding site 1 out of 1 in the Crystal Structure of Beta-Conglutin From Lupinus Albus Refined to 2.81 A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Beta-Conglutin From Lupinus Albus Refined to 2.81 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K603

b:66.0
occ:1.00
NE2 A:HIS380 3.5 48.5 1.0
ND2 A:ASN382 3.8 42.8 1.0
NH1 A:ARG463 3.9 47.3 1.0
CD2 A:HIS380 4.0 46.0 1.0
CZ A:PHE348 4.1 56.8 1.0
CE2 A:PHE348 4.1 50.7 1.0
CD A:ARG463 4.3 40.6 1.0
CE1 A:HIS380 4.6 43.4 1.0
CD1 A:ILE435 4.7 46.3 1.0
CD2 A:PHE387 4.7 31.4 1.0
CZ A:ARG463 4.8 41.8 1.0
CD2 A:LEU377 4.8 36.6 1.0
CG A:PHE387 4.8 30.8 1.0
CG A:ASN382 4.9 43.0 1.0
CE2 A:PHE387 4.9 31.4 1.0
NE A:ARG463 4.9 41.0 1.0

Reference:

R.M.Dolot, C.K.O'sullivan, M.Jauset-Rubio. First Crystal Structure of Beta-Conglutin, A Major Lupin Allergen From Lupinus Albus Seeds To Be Published.
Page generated: Sat Aug 9 17:16:44 2025

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