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Potassium in PDB 8iym: Crystal Structure of A Protein Acetyltransferase, HP0935

Protein crystallography data

The structure of Crystal Structure of A Protein Acetyltransferase, HP0935, PDB code: 8iym was solved by V.Dadireddy, P.Mahanta, A.Kumar, R.N.Desirazu, S.Ramakumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.88 / 1.94
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 117.856, 66.17, 70.904, 90, 91.42, 90
R / Rfree (%) 21.3 / 23.8

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of A Protein Acetyltransferase, HP0935 (pdb code 8iym). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Crystal Structure of A Protein Acetyltransferase, HP0935, PDB code: 8iym:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in 8iym

Go back to Potassium Binding Sites List in 8iym
Potassium binding site 1 out of 3 in the Crystal Structure of A Protein Acetyltransferase, HP0935


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of A Protein Acetyltransferase, HP0935 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K201

b:30.2
occ:1.00
N A:TYR103 4.0 14.6 1.0
CA A:TYR103 4.0 17.1 1.0
CG A:LYS102 4.1 21.5 1.0
CB A:LYS102 4.3 17.2 1.0
C A:LYS102 4.3 16.1 1.0
CB A:TYR103 4.4 17.2 1.0
O A:LYS102 4.5 16.4 1.0
CG1 A:ILE106 4.7 24.9 1.0
CD2 A:TYR103 4.7 20.1 1.0
CD1 A:ILE106 4.7 27.3 1.0
O A:SER99 4.8 18.4 1.0

Potassium binding site 2 out of 3 in 8iym

Go back to Potassium Binding Sites List in 8iym
Potassium binding site 2 out of 3 in the Crystal Structure of A Protein Acetyltransferase, HP0935


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of A Protein Acetyltransferase, HP0935 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K202

b:41.8
occ:1.00
N A:ILE30 3.5 28.6 1.0
CA A:PHE29 4.0 28.9 1.0
CD1 A:PHE29 4.1 33.4 1.0
CB A:PHE29 4.1 30.2 1.0
CB A:ILE30 4.2 28.7 1.0
C A:PHE29 4.3 27.5 1.0
CG1 A:ILE30 4.3 29.9 1.0
CD1 A:ILE30 4.3 31.2 1.0
CA A:ILE30 4.4 27.9 1.0
OG A:SER119 4.5 31.0 1.0
CG A:PHE29 4.5 30.9 1.0
O A:ILE30 4.5 25.5 1.0
CB A:SER119 4.6 29.1 1.0
O A:HOH350 4.6 40.2 1.0
O A:HOH323 4.7 23.8 1.0

Potassium binding site 3 out of 3 in 8iym

Go back to Potassium Binding Sites List in 8iym
Potassium binding site 3 out of 3 in the Crystal Structure of A Protein Acetyltransferase, HP0935


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of A Protein Acetyltransferase, HP0935 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K201

b:46.4
occ:0.50
N C:ILE30 3.6 31.9 1.0
CA C:PHE29 4.1 29.9 1.0
OG C:SER119 4.1 30.8 1.0
CD1 C:PHE29 4.2 30.9 1.0
CB C:PHE29 4.2 30.0 1.0
CB C:ILE30 4.3 32.2 1.0
CB C:SER119 4.3 32.6 1.0
C C:PHE29 4.3 30.2 1.0
CA C:ILE30 4.4 31.0 1.0
CG C:PHE29 4.4 29.5 1.0
O C:ILE30 4.5 28.4 1.0
CG1 C:ILE30 4.5 33.5 1.0
O C:HOH304 4.5 30.9 1.0
CD1 C:ILE30 4.6 36.2 1.0
O C:HOH324 4.9 28.4 1.0
C C:ILE30 5.0 30.0 1.0

Reference:

V.Dadireddy, P.Mahanta, A.Kumar, R.N.Desirazu, S.Ramakumar. Crystal Structure of A Protein Acetyltransferase, HP0935 To Be Published.
Page generated: Sat Aug 9 17:09:38 2025

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