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Potassium in PDB 8dyd: Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate

Enzymatic activity of Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate

All present enzymatic activity of Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate:
1.3.5.1;

Protein crystallography data

The structure of Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate, PDB code: 8dyd was solved by P.Sharma, E.Maklashina, G.Cecchini, T.M.Iverson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.49 / 1.52
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.048, 103.206, 126.237, 90, 90, 90
R / Rfree (%) 15.7 / 18.4

Other elements in 8dyd:

The structure of Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate (pdb code 8dyd). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate, PDB code: 8dyd:

Potassium binding site 1 out of 1 in 8dyd

Go back to Potassium Binding Sites List in 8dyd
Potassium binding site 1 out of 1 in the Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K704

b:20.9
occ:1.00
 O A:GLU440 2.4 12.5 1.0
O A:HOH994 2.4 13.3 1.0
O A:GLY411 2.4 13.2 1.0
O A:ASN409 2.5 13.4 1.0
O A:ALA442 2.5 12.3 1.0
O A:MET410 3.0 15.5 1.0
C A:MET410 3.3 13.3 1.0
HA A:GLU440 3.4 14.3 1.0
C A:GLY411 3.4 14.0 1.0
C A:GLU440 3.4 12.3 1.0
C A:ASN409 3.6 14.1 1.0
HG3 A:GLU440 3.7 14.5 1.0
HA A:MET410 3.7 14.9 1.0
C A:ALA442 3.7 11.4 1.0
HA3 A:GLY412 3.7 13.0 1.0
O A:HOH1040 3.7 16.7 1.0
N A:GLY411 3.8 13.9 1.0
CA A:GLU440 3.9 11.9 1.0
CA A:MET410 3.9 12.4 1.0
HH A:TYR408 4.1 17.9 1.0
HG2 A:GLU440 4.1 14.5 1.0
N A:ALA442 4.1 11.5 1.0
CA A:GLY411 4.2 13.2 1.0
H A:ALA442 4.2 13.9 1.0
HA A:CYS443 4.2 15.2 1.0
N A:MET410 4.2 13.1 1.0
N A:GLY412 4.3 13.1 1.0
HE2 A:TYR408 4.3 15.9 1.0
HB2 A:CYS443 4.3 12.3 1.0
CG A:GLU440 4.3 12.1 1.0
C A:ALA441 4.3 11.1 1.0
HB2 A:ASN409 4.3 18.1 1.0
O A:GLY439 4.3 13.3 1.0
HB3 A:ASN409 4.3 18.1 1.0
H A:GLY411 4.4 16.6 1.0
N A:ALA441 4.4 11.9 1.0
CA A:GLY412 4.4 10.8 1.0
HA2 A:GLY411 4.5 15.8 1.0
HA A:ALA441 4.5 13.3 1.0
OH A:TYR408 4.6 14.9 1.0
CA A:ALA442 4.6 11.0 1.0
N A:CYS443 4.6 12.6 1.0
HD2 A:HIS447 4.6 17.2 1.0
CB A:ASN409 4.7 15.1 1.0
O A:HOH989 4.7 15.8 1.0
CE2 A:TYR408 4.7 13.3 1.0
CA A:ALA441 4.7 11.1 1.0
O A:HOH870 4.7 18.7 1.0
CB A:GLU440 4.7 14.5 1.0
CA A:ASN409 4.7 12.3 1.0
CA A:CYS443 4.8 12.6 1.0
O A:ALA441 4.8 12.6 1.0
HG A:CYS443 4.9 17.2 1.0
CZ A:TYR408 4.9 12.9 1.0
HA2 A:GLY412 4.9 13.0 1.0
CB A:CYS443 4.9 10.2 1.0
HA3 A:GLY411 5.0 15.8 1.0

Reference:

P.Sharma, E.Maklashina, G.Cecchini, T.M.Iverson. Crystal Structure of Human Sdha-ADHAF2-SDHAF4 Assembly Intermediate To Be Published.
Page generated: Sat Aug 9 16:45:02 2025

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