Atomistry » Potassium » PDB 8ctu-8djb » 8dcl
Atomistry »
  Potassium »
    PDB 8ctu-8djb »
      8dcl »

Potassium in PDB 8dcl: Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36

Enzymatic activity of Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36

All present enzymatic activity of Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36:
5.1.3.13;

Protein crystallography data

The structure of Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36, PDB code: 8dcl was solved by J.B.Thoden, M.K.Ghosh, D.F.Xiang, F.M.Raushel, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.75 / 1.55
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 39.84, 44.766, 57.428, 83.25, 79.35, 65.08
R / Rfree (%) 16.5 / 20

Other elements in 8dcl:

The structure of Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36 also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36 (pdb code 8dcl). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36, PDB code: 8dcl:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 8dcl

Go back to Potassium Binding Sites List in 8dcl
Potassium binding site 1 out of 2 in the Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K202

b:16.0
occ:1.00
 O A:HOH472 2.6 21.4 1.0
O A:LEU48 2.6 11.7 1.0
O A:ASP41 2.7 12.2 1.0
O A:PRO45 3.0 19.6 1.0
O A:HOH468 3.0 28.6 1.0
O A:HOH444 3.0 17.7 1.0
O A:LEU44 3.2 15.8 1.0
C A:PRO45 3.7 22.1 1.0
C A:LEU44 3.7 17.4 1.0
C A:ASP41 3.7 13.1 1.0
C A:LEU48 3.8 13.3 1.0
CB A:LEU44 3.8 13.2 1.0
N A:LEU48 4.1 16.1 1.0
N A:ASN46 4.2 23.7 1.0
CA A:LEU44 4.2 14.3 1.0
CA A:ASN46 4.2 24.8 1.0
NA A:NA204 4.2 30.1 1.0
N A:GLY47 4.2 19.0 1.0
N A:LEU44 4.4 13.1 1.0
N A:PRO45 4.5 18.5 1.0
CA A:LEU48 4.5 14.4 1.0
C A:ASN46 4.5 22.6 1.0
N A:LYS42 4.5 14.2 1.0
CA A:LYS42 4.6 16.4 1.0
CA A:PRO45 4.6 19.7 1.0
CA A:ASP41 4.7 11.8 1.0
CB A:ASP41 4.7 13.1 1.0
C A:LYS42 4.8 15.8 1.0
CG A:LYS49 4.8 14.3 1.0
N A:LYS49 4.9 11.9 1.0
O A:LYS42 4.9 15.9 1.0
CB A:LEU48 4.9 16.0 1.0
CG A:LEU44 4.9 13.9 1.0

Potassium binding site 2 out of 2 in 8dcl

Go back to Potassium Binding Sites List in 8dcl
Potassium binding site 2 out of 2 in the Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3- Epimerase From Campylobacter Jejuni, Serotype Hs:23/36 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K202

b:19.9
occ:1.00
 O B:HOH446 2.6 30.4 1.0
O B:ASP41 2.8 14.3 1.0
O B:LEU48 2.8 13.9 1.0
O B:PRO45 2.9 14.5 1.0
O B:HOH460 3.0 30.2 1.0
O B:LEU44 3.0 15.3 1.0
C B:LEU44 3.6 17.3 1.0
CB B:LEU44 3.7 14.8 1.0
C B:ASP41 3.8 13.9 1.0
C B:PRO45 3.8 17.3 1.0
C B:LEU48 4.0 13.7 1.0
CA B:LEU44 4.0 15.0 1.0
N B:LEU48 4.2 15.6 1.0
N B:LEU44 4.2 14.7 1.0
N B:PRO45 4.3 18.0 1.0
O B:HOH330 4.3 32.1 1.0
NA B:NA203 4.4 30.9 1.0
CA B:LYS42 4.4 17.6 1.0
N B:LYS42 4.5 14.9 1.0
C B:LYS42 4.5 18.5 1.0
N B:ASN46 4.5 17.7 1.0
CA B:LEU48 4.6 16.2 1.0
O B:LYS42 4.6 16.7 1.0
N B:GLY47 4.6 16.6 1.0
CA B:PRO45 4.7 17.9 1.0
CA B:ASN46 4.7 19.5 1.0
CA B:ASP41 4.8 12.7 1.0
CB B:ASP41 4.8 11.9 1.0
C B:ASN46 4.9 18.9 1.0
CB B:LEU48 4.9 17.2 1.0
CG B:LEU44 4.9 16.5 1.0

Reference:

M.K.Ghosh, D.F.Xiang, J.B.Thoden, H.M.Holden, F.M.Raushel. C3- and C3/C5-Epimerases Required For the Biosynthesis of the Capsular Polysaccharides From Campylobacter Jejuni . Biochemistry V. 61 2036 2022.
ISSN: ISSN 0006-2960
PubMed: 36093987
DOI: 10.1021/ACS.BIOCHEM.2C00364
Page generated: Sat Aug 9 16:42:13 2025

Last articles

Mg in 7PLH
Mg in 7PJI
Mg in 7PJE
Mg in 7PJF
Mg in 7PH4
Mg in 7PDZ
Mg in 7PH3
Mg in 7PGI
Mg in 7PEM
Mg in 7PDS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy