Atomistry » Potassium » PDB 8cfh-8ctt » 8cfn
Atomistry »
  Potassium »
    PDB 8cfh-8ctt »
      8cfn »

Potassium in PDB 8cfn: Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03

Enzymatic activity of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03

All present enzymatic activity of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03:
3.3.1.1;

Protein crystallography data

The structure of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03, PDB code: 8cfn was solved by P.H.Malecki, M.Gawel, M.Stepniewska, K.Brzezinski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.46 / 1.34
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 142.55, 85.31, 111.41, 90, 122.52, 90
R / Rfree (%) 15.8 / 18.8

Other elements in 8cfn:

The structure of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03 also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03 (pdb code 8cfn). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03, PDB code: 8cfn:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 8cfn

Go back to Potassium Binding Sites List in 8cfn
Potassium binding site 1 out of 2 in the Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K502

b:18.7
occ:1.00
O A:THR380 2.7 16.5 1.0
O A:HOH805 2.7 19.2 1.0
O A:HIS382 2.7 17.1 1.0
O A:HOH806 2.8 17.9 1.0
OG1 A:THR380 2.9 17.8 1.0
O C:HOH808 3.1 18.6 1.0
OE1 A:GLN65 3.3 17.1 1.0
NE2 A:GLN65 3.4 16.8 1.0
CD A:GLN65 3.5 15.4 1.0
CB A:THR380 3.5 16.2 1.0
C A:THR380 3.6 16.1 1.0
C A:HIS382 3.6 15.8 1.0
O A:GLY381 3.7 16.2 1.0
CA A:PRO383 4.0 16.2 1.0
N6 A:ADE506 4.0 17.3 1.0
C A:GLY381 4.1 15.1 1.0
N A:PRO383 4.2 16.2 1.0
CA A:THR380 4.2 15.2 1.0
CB C:ASP216 4.3 17.7 1.0
O A:HOH910 4.4 21.4 1.0
N A:HIS382 4.5 16.6 1.0
CG C:ASP216 4.5 17.7 1.0
N A:GLY381 4.5 15.6 1.0
OD1 C:ASP216 4.6 17.1 1.0
CG A:GLN65 4.6 17.1 1.0
C A:PRO383 4.7 14.7 1.0
CA A:HIS382 4.7 17.1 1.0
N A:SER384 4.7 14.4 1.0
CA A:GLY381 4.7 15.1 1.0
CG2 A:THR380 4.8 16.5 1.0
OE1 A:GLN91 4.8 21.0 1.0
O C:ASP216 5.0 17.4 1.0

Potassium binding site 2 out of 2 in 8cfn

Go back to Potassium Binding Sites List in 8cfn
Potassium binding site 2 out of 2 in the Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with F2X-Entry Library Fragment F03 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K502

b:17.0
occ:1.00
O C:THR380 2.7 16.0 1.0
O C:HOH814 2.8 16.7 1.0
O C:HIS382 2.8 15.7 1.0
OG1 C:THR380 2.8 16.4 1.0
O C:HOH864 2.8 15.5 1.0
O A:HOH758 3.1 17.8 1.0
OE1 C:GLN65 3.2 16.6 1.0
NE2 C:GLN65 3.4 15.5 1.0
CD C:GLN65 3.4 15.5 1.0
CB C:THR380 3.5 15.6 1.0
C C:THR380 3.6 15.2 1.0
C C:HIS382 3.6 16.3 1.0
O C:GLY381 3.7 16.0 1.0
CA C:PRO383 4.0 15.3 1.0
N6 C:ADE510 4.0 16.3 1.0
C C:GLY381 4.1 15.6 1.0
CA C:THR380 4.2 15.0 1.0
N C:PRO383 4.2 14.6 1.0
CB A:ASP216 4.3 16.4 1.0
O C:HOH968 4.4 19.1 1.0
N C:HIS382 4.4 14.7 1.0
N C:GLY381 4.5 15.5 1.0
CG A:ASP216 4.5 17.3 1.0
CG C:GLN65 4.6 15.4 1.0
OD1 A:ASP216 4.6 17.7 1.0
CA C:HIS382 4.7 16.2 1.0
C C:PRO383 4.7 15.7 1.0
CA C:GLY381 4.7 15.9 1.0
N C:SER384 4.8 15.5 1.0
CG2 C:THR380 4.8 15.8 1.0
OE1 C:GLN91 4.8 17.9 1.0
O A:ASP216 5.0 17.3 1.0

Reference:

P.H.Malecki, M.Gawel, M.Stepniewska, K.Brzezinski. Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From P. Aeruginosa in Complex with Fragment F2X-Entry F03 To Be Published.
Page generated: Sat Aug 9 16:02:17 2025

Last articles

Mg in 4CZG
Mg in 4CZF
Mg in 4CYI
Mg in 4CZ2
Mg in 4CZ1
Mg in 4CYQ
Mg in 4CYP
Mg in 4CYO
Mg in 4CYJ
Mg in 4CW7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy