Atomistry » Potassium » PDB 7xxk-7zgo » 7zd2
Atomistry »
  Potassium »
    PDB 7xxk-7zgo »
      7zd2 »

Potassium in PDB 7zd2: Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions.

Enzymatic activity of Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions.

All present enzymatic activity of Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions.:
3.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions., PDB code: 7zd2 was solved by P.H.Malecki, M.Gawel, K.Brzezinski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.32 / 2.16
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 177.15, 134.21, 109.61, 90, 106.08, 90
R / Rfree (%) 18 / 22.7

Other elements in 7zd2:

The structure of Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions. also contains other interesting chemical elements:

Cobalt (Co) 15 atoms
Chlorine (Cl) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions. (pdb code 7zd2). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions., PDB code: 7zd2:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 7zd2

Go back to Potassium Binding Sites List in 7zd2
Potassium binding site 1 out of 4 in the Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K504

b:34.6
occ:1.00
O A:HIS382 2.8 23.1 1.0
O A:THR380 2.8 24.3 1.0
O A:HOH765 2.9 22.9 1.0
OG1 A:THR380 2.9 25.4 1.0
O A:HOH730 3.0 21.7 1.0
OE1 A:GLN65 3.1 22.1 1.0
O B:HOH663 3.2 31.8 1.0
NE2 A:GLN65 3.4 19.2 1.0
CD A:GLN65 3.4 24.0 1.0
CB A:THR380 3.6 26.1 1.0
C A:THR380 3.6 25.2 1.0
C A:HIS382 3.6 24.0 1.0
O A:GLY381 3.8 23.2 1.0
N6 A:ADN502 3.9 23.5 1.0
CA A:PRO383 3.9 20.6 1.0
C A:GLY381 4.0 22.6 1.0
N A:PRO383 4.1 19.8 1.0
CA A:THR380 4.2 26.7 1.0
CB B:ASP216 4.3 25.0 1.0
N A:HIS382 4.4 24.9 1.0
N A:GLY381 4.5 22.5 1.0
CG A:GLN65 4.5 21.9 1.0
CG B:ASP216 4.6 22.2 1.0
C A:PRO383 4.6 23.6 1.0
CA A:GLY381 4.6 24.8 1.0
O A:HOH940 4.6 26.8 1.0
CA A:HIS382 4.7 22.2 1.0
OD1 B:ASP216 4.7 24.1 1.0
N A:SER384 4.7 21.8 1.0
CG2 A:THR380 4.9 23.7 1.0
O B:ASP216 4.9 25.9 1.0
OE1 A:GLN91 5.0 27.0 1.0

Potassium binding site 2 out of 4 in 7zd2

Go back to Potassium Binding Sites List in 7zd2
Potassium binding site 2 out of 4 in the Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K504

b:37.0
occ:1.00
O B:THR380 2.7 27.5 1.0
O B:HIS382 2.7 28.1 1.0
O B:HOH647 3.0 27.2 1.0
OG1 B:THR380 3.0 30.0 1.0
O A:HOH838 3.0 32.0 1.0
O B:HOH691 3.1 32.1 1.0
OE1 B:GLN65 3.1 31.6 1.0
NE2 B:GLN65 3.4 28.3 1.0
CD B:GLN65 3.4 36.6 1.0
CB B:THR380 3.5 31.7 1.0
C B:THR380 3.6 27.7 1.0
C B:HIS382 3.6 27.4 1.0
O B:GLY381 3.8 23.9 1.0
N6 B:ADN502 3.9 32.2 1.0
CA B:PRO383 4.0 26.7 1.0
C B:GLY381 4.1 30.2 1.0
N B:PRO383 4.2 27.2 1.0
CA B:THR380 4.2 30.5 1.0
CB A:ASP216 4.3 27.0 1.0
N B:HIS382 4.5 31.0 1.0
N B:GLY381 4.5 26.3 1.0
CG B:GLN65 4.5 33.4 1.0
CG A:ASP216 4.6 31.2 1.0
O B:HOH859 4.6 31.3 1.0
C B:PRO383 4.7 34.1 1.0
CA B:HIS382 4.7 28.1 1.0
CA B:GLY381 4.7 28.5 1.0
OD1 A:ASP216 4.7 26.0 1.0
OE1 B:GLN91 4.7 38.2 1.0
N B:SER384 4.8 31.7 1.0
CG2 B:THR380 4.8 26.7 1.0

Potassium binding site 3 out of 4 in 7zd2

Go back to Potassium Binding Sites List in 7zd2
Potassium binding site 3 out of 4 in the Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K506

b:33.4
occ:1.00
O C:HIS382 2.8 24.7 1.0
O C:HOH692 2.8 22.8 1.0
O C:THR380 2.8 27.9 1.0
OG1 C:THR380 2.9 25.1 1.0
O C:HOH696 3.0 27.0 1.0
O D:HOH764 3.2 23.5 1.0
OE1 C:GLN65 3.2 23.2 1.0
NE2 C:GLN65 3.5 21.7 1.0
CB C:THR380 3.5 28.7 1.0
CD C:GLN65 3.5 25.5 1.0
C C:THR380 3.6 25.6 1.0
O C:GLY381 3.6 26.1 1.0
C C:HIS382 3.6 26.1 1.0
C C:GLY381 4.0 28.8 1.0
CA C:PRO383 4.0 24.4 1.0
N6 C:ADN502 4.2 24.2 1.0
N C:PRO383 4.2 26.6 1.0
CA C:THR380 4.2 27.9 1.0
CB D:ASP216 4.3 24.9 1.0
N C:HIS382 4.4 27.7 1.0
N C:GLY381 4.5 26.6 1.0
CG D:ASP216 4.5 27.1 1.0
OD1 D:ASP216 4.5 26.8 1.0
O C:HOH931 4.6 30.6 1.0
CA C:GLY381 4.6 25.1 1.0
CA C:HIS382 4.7 24.9 1.0
CG C:GLN65 4.7 23.8 1.0
C C:PRO383 4.7 25.1 1.0
N C:SER384 4.8 22.3 1.0
CG2 C:THR380 4.8 23.3 1.0
OE1 C:GLN91 4.9 25.7 1.0
O C:HOH685 4.9 25.9 1.0
O D:ASP216 5.0 27.1 1.0

Potassium binding site 4 out of 4 in 7zd2

Go back to Potassium Binding Sites List in 7zd2
Potassium binding site 4 out of 4 in the Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K505

b:34.3
occ:1.00
O D:HOH702 2.7 24.7 1.0
O D:HIS382 2.8 25.8 1.0
O D:THR380 2.8 29.4 1.0
O D:HOH759 2.9 29.2 1.0
OG1 D:THR380 3.0 30.3 1.0
O C:HOH741 3.1 28.4 1.0
NE2 D:GLN65 3.2 26.9 1.0
OE1 D:GLN65 3.3 28.1 1.0
CD D:GLN65 3.4 31.1 1.0
CB D:THR380 3.5 30.3 1.0
C D:THR380 3.6 30.7 1.0
C D:HIS382 3.6 29.9 1.0
O D:GLY381 3.7 30.3 1.0
CA D:PRO383 3.9 25.0 1.0
N6 D:ADN502 4.0 25.5 1.0
C D:GLY381 4.1 30.2 1.0
N D:PRO383 4.1 27.1 1.0
CA D:THR380 4.2 29.5 1.0
CB C:ASP216 4.3 27.6 1.0
O D:HOH883 4.5 30.1 1.0
CG C:ASP216 4.5 30.5 1.0
N D:GLY381 4.5 28.6 1.0
N D:HIS382 4.5 28.5 1.0
CG D:GLN65 4.6 25.7 1.0
C D:PRO383 4.6 30.0 1.0
OD1 C:ASP216 4.6 31.4 1.0
N D:SER384 4.7 27.0 1.0
CA D:GLY381 4.7 26.8 1.0
CA D:HIS382 4.7 26.2 1.0
CG2 D:THR380 4.8 29.2 1.0
OE1 D:GLN91 4.8 35.4 1.0
O C:ASP216 4.9 26.5 1.0

Reference:

P.H.Malecki, M.Gawel, K.Brzezinski. Crystal Structure of Pseudomonas Aeruginosa S-Adenosyl-L-Homocysteine Hydrolase Inhibited By CO2+ Ions. To Be Published.
Page generated: Sat Aug 9 15:23:33 2025

Last articles

Mg in 1VQP
Mg in 1VQO
Mg in 1W55
Mg in 1W54
Mg in 1W4B
Mg in 1W49
Mg in 1W46
Mg in 1W2Y
Mg in 1VQN
Mg in 1W25
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy