Atomistry » Potassium » PDB 7xxk-7zgo » 7yid
Atomistry »
  Potassium »
    PDB 7xxk-7zgo »
      7yid »

Potassium in PDB 7yid: Human KCNH5 Closed State 1

Potassium Binding Sites:

The binding sites of Potassium atom in the Human KCNH5 Closed State 1 (pdb code 7yid). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Human KCNH5 Closed State 1, PDB code: 7yid:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 7yid

Go back to Potassium Binding Sites List in 7yid
Potassium binding site 1 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1001

b:28.1
occ:1.00
 CB A:PHE464 4.8 11.4 1.0
CB C:PHE464 4.8 27.9 1.0
CB D:PHE464 4.8 24.8 1.0
CB B:PHE464 4.8 11.1 1.0
CD2 B:PHE464 4.8 11.1 1.0
CD2 A:PHE464 4.8 11.4 1.0
CD2 C:PHE464 4.8 27.9 1.0
CD2 D:PHE464 4.8 24.8 1.0
CG2 D:THR468 5.0 18.5 1.0
CG2 C:THR468 5.0 17.8 1.0
CG2 A:THR468 5.0 25.4 1.0
CG2 B:THR468 5.0 19.2 1.0

Potassium binding site 2 out of 6 in 7yid

Go back to Potassium Binding Sites List in 7yid
Potassium binding site 2 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1002

b:21.8
occ:1.00
 K A:K1003 2.9 11.4 1.0
OH A:TYR460 3.9 16.7 1.0
OH C:TYR460 3.9 13.1 1.0
OH D:TYR460 3.9 11.7 1.0
OH B:TYR460 3.9 15.1 1.0
OG1 D:THR432 4.0 19.0 1.0
OG1 A:THR432 4.0 19.0 1.0
OG1 B:THR432 4.0 19.0 1.0
OG1 C:THR432 4.0 19.0 1.0
CE2 A:TYR460 4.1 16.7 1.0
CE2 D:TYR460 4.1 11.7 1.0
CE2 C:TYR460 4.1 13.1 1.0
CE2 B:TYR460 4.1 15.1 1.0
CZ A:TYR460 4.4 16.7 1.0
CZ B:TYR460 4.4 15.1 1.0
CZ D:TYR460 4.4 11.7 1.0
CZ C:TYR460 4.4 13.1 1.0
CB D:THR432 4.9 19.0 1.0
CB A:THR432 4.9 19.0 1.0
CB C:THR432 4.9 19.0 1.0
CB B:THR432 4.9 19.0 1.0

Potassium binding site 3 out of 6 in 7yid

Go back to Potassium Binding Sites List in 7yid
Potassium binding site 3 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1003

b:11.4
occ:1.00
 K A:K1002 2.9 21.8 1.0
O D:THR432 3.1 19.0 1.0
O A:THR432 3.1 19.0 1.0
O B:THR432 3.1 19.0 1.0
O C:THR432 3.1 19.0 1.0
OG1 D:THR432 3.3 19.0 1.0
OG1 A:THR432 3.3 19.0 1.0
OG1 B:THR432 3.3 19.0 1.0
OG1 C:THR432 3.3 19.0 1.0
CB D:THR432 3.8 19.0 1.0
CB A:THR432 3.8 19.0 1.0
CB C:THR432 3.8 19.0 1.0
CB B:THR432 3.8 19.0 1.0
K A:K1004 3.9 19.0 1.0
C D:THR432 4.2 19.0 1.0
C A:THR432 4.2 19.0 1.0
C B:THR432 4.2 19.0 1.0
C C:THR432 4.2 19.0 1.0
CA D:THR432 4.7 19.0 1.0
CA A:THR432 4.7 19.0 1.0
CA B:THR432 4.7 19.0 1.0
CA C:THR432 4.7 19.0 1.0
CG2 D:THR432 5.0 19.0 1.0
CG2 A:THR432 5.0 19.0 1.0
CG2 B:THR432 5.0 19.0 1.0
CG2 C:THR432 5.0 19.0 1.0

Potassium binding site 4 out of 6 in 7yid

Go back to Potassium Binding Sites List in 7yid
Potassium binding site 4 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1004

b:19.0
occ:1.00
 O B:ILE433 2.9 19.0 1.0
O C:ILE433 2.9 19.0 1.0
O D:ILE433 2.9 19.0 1.0
O A:ILE433 2.9 19.0 1.0
O A:THR432 3.1 19.0 1.0
O D:THR432 3.1 19.0 1.0
O B:THR432 3.1 19.0 1.0
O C:THR432 3.1 19.0 1.0
C A:ILE433 3.7 19.0 1.0
C D:ILE433 3.7 19.0 1.0
C B:ILE433 3.7 19.0 1.0
C C:ILE433 3.7 19.0 1.0
K A:K1003 3.9 11.4 1.0
CA A:ILE433 3.9 19.0 1.0
CA D:ILE433 3.9 19.0 1.0
CA B:ILE433 3.9 19.0 1.0
CA C:ILE433 3.9 19.0 1.0
C D:THR432 3.9 19.0 1.0
C A:THR432 3.9 19.0 1.0
C B:THR432 3.9 19.0 1.0
C C:THR432 3.9 19.0 1.0
N A:ILE433 4.4 19.0 1.0
N D:ILE433 4.4 19.0 1.0
N B:ILE433 4.4 19.0 1.0
N C:ILE433 4.4 19.0 1.0
N A:GLY434 4.9 19.0 1.0
N D:GLY434 4.9 19.0 1.0
N B:GLY434 4.9 19.0 1.0
N C:GLY434 4.9 19.0 1.0

Potassium binding site 5 out of 6 in 7yid

Go back to Potassium Binding Sites List in 7yid
Potassium binding site 5 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1005

b:19.0
occ:1.00
 O D:PHE435 2.8 19.0 1.0
O B:PHE435 2.8 19.0 1.0
O C:PHE435 2.8 19.0 1.0
O A:PHE435 2.8 19.0 1.0
O B:GLY434 2.8 19.0 1.0
O A:GLY434 2.8 19.0 1.0
O D:GLY434 2.8 19.0 1.0
O C:GLY434 2.8 19.0 1.0
C B:PHE435 3.7 19.0 1.0
C D:PHE435 3.7 19.0 1.0
C A:PHE435 3.7 19.0 1.0
C C:PHE435 3.7 19.0 1.0
C B:GLY434 4.0 19.0 1.0
C A:GLY434 4.0 19.0 1.0
C D:GLY434 4.0 19.0 1.0
C C:GLY434 4.0 19.0 1.0
CA B:PHE435 4.1 19.0 1.0
CA D:PHE435 4.1 19.0 1.0
CA C:PHE435 4.1 19.0 1.0
CA A:PHE435 4.1 19.0 1.0
N B:PHE435 4.6 19.0 1.0
N D:PHE435 4.6 19.0 1.0
N A:PHE435 4.6 19.0 1.0
N C:PHE435 4.6 19.0 1.0
N D:GLY436 4.7 19.0 1.0
N B:GLY436 4.7 19.0 1.0
N A:GLY436 4.7 19.0 1.0
N C:GLY436 4.7 19.0 1.0
K A:K1006 5.0 13.8 1.0
O A:ILE433 5.0 19.0 1.0
O B:ILE433 5.0 19.0 1.0
O D:ILE433 5.0 19.0 1.0

Potassium binding site 6 out of 6 in 7yid

Go back to Potassium Binding Sites List in 7yid
Potassium binding site 6 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1006

b:13.8
occ:1.00
 O A:PHE435 4.2 19.0 1.0
O B:PHE435 4.2 19.0 1.0
O C:PHE435 4.2 19.0 1.0
O D:PHE435 4.2 19.0 1.0
O B:HOH1001 4.3 11.3 1.0
O A:HOH1101 4.3 11.5 1.0
O D:HOH1001 4.3 11.5 1.0
O C:HOH1001 4.3 11.2 1.0
CA A:GLY436 4.8 19.0 1.0
CA B:GLY436 4.8 19.0 1.0
CA C:GLY436 4.8 19.0 1.0
CA D:GLY436 4.8 19.0 1.0
O D:GLY436 4.9 19.0 1.0
O B:GLY436 4.9 19.0 1.0
O A:GLY436 4.9 19.0 1.0
O C:GLY436 4.9 19.0 1.0
K A:K1005 5.0 19.0 1.0

Reference:

M.Zhang, Y.Shan, D.Pei. Mechanism Underlying Delayed Rectifying in Human Voltage-Mediated Activation EAG2 Channel. Nat Commun V. 14 1470 2023.
ISSN: ESSN 2041-1723
PubMed: 36928654
DOI: 10.1038/S41467-023-37204-6
Page generated: Sat Aug 9 15:19:07 2025

Last articles

Mg in 6C6Q
Mg in 6C7B
Mg in 6C6U
Mg in 6C6T
Mg in 6C6S
Mg in 6C4C
Mg in 6C6K
Mg in 6C6O
Mg in 6C4A
Mg in 6C62
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy