Atomistry » Potassium » PDB 7xxk-7zgo » 7xzo
Atomistry »
  Potassium »
    PDB 7xxk-7zgo »
      7xzo »

Potassium in PDB 7xzo: Formate-Tetrahydrofolate Ligase in Complex with Atp

Enzymatic activity of Formate-Tetrahydrofolate Ligase in Complex with Atp

All present enzymatic activity of Formate-Tetrahydrofolate Ligase in Complex with Atp:
6.3.4.3;

Protein crystallography data

The structure of Formate-Tetrahydrofolate Ligase in Complex with Atp, PDB code: 7xzo was solved by C.L.Fang, Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.03 / 2.31
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 215.28, 115.1, 106.53, 90, 93.15, 90
R / Rfree (%) 25.2 / 29

Potassium Binding Sites:

The binding sites of Potassium atom in the Formate-Tetrahydrofolate Ligase in Complex with Atp (pdb code 7xzo). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Formate-Tetrahydrofolate Ligase in Complex with Atp, PDB code: 7xzo:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 7xzo

Go back to Potassium Binding Sites List in 7xzo
Potassium binding site 1 out of 4 in the Formate-Tetrahydrofolate Ligase in Complex with Atp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Formate-Tetrahydrofolate Ligase in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K601

b:38.4
occ:1.00
O A:PRO97 2.8 39.8 1.0
O A:LEU125 2.8 28.2 1.0
O A:ILE123 2.9 38.7 1.0
O A:HOH716 2.9 38.8 1.0
OE2 A:GLU96 3.2 39.4 1.0
C A:PRO97 3.7 35.9 1.0
C A:LEU125 3.9 28.1 1.0
CG A:GLU96 4.0 39.7 1.0
CD A:GLU96 4.0 42.6 1.0
C A:ILE123 4.0 35.0 1.0
O A:HOH705 4.0 27.8 1.0
C A:ASN124 4.1 39.1 1.0
N A:LEU125 4.1 35.2 1.0
N A:MET99 4.2 41.5 1.0
C A:SER98 4.3 34.0 1.0
O A:ASN124 4.3 42.5 1.0
CA A:SER98 4.3 38.1 1.0
N A:SER98 4.4 35.2 1.0
CA A:ASN124 4.5 37.4 1.0
CG A:MET131 4.5 32.2 1.0
CA A:LEU125 4.5 34.1 1.0
CB A:PHE127 4.5 28.8 1.0
CA A:MET99 4.7 37.3 1.0
CB A:MET99 4.7 33.6 1.0
N A:ASN124 4.7 37.4 1.0
CA A:PRO97 4.7 32.9 1.0
N A:PRO97 4.8 29.9 1.0
O A:SER98 4.8 36.5 1.0
CD A:PRO97 4.9 38.1 1.0
C A:HIS126 4.9 27.1 1.0
CB A:PRO97 4.9 30.8 1.0
N A:HIS126 4.9 25.2 1.0
N A:PHE127 5.0 25.3 1.0
O A:ASP122 5.0 32.1 1.0

Potassium binding site 2 out of 4 in 7xzo

Go back to Potassium Binding Sites List in 7xzo
Potassium binding site 2 out of 4 in the Formate-Tetrahydrofolate Ligase in Complex with Atp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Formate-Tetrahydrofolate Ligase in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K601

b:34.0
occ:1.00
O B:LEU125 2.8 35.4 1.0
O B:PRO97 2.8 35.1 1.0
O B:ILE123 2.8 38.9 1.0
OE2 B:GLU96 3.1 32.0 1.0
C B:PRO97 3.8 33.8 1.0
CD B:GLU96 3.9 36.1 1.0
C B:LEU125 3.9 32.0 1.0
C B:ILE123 3.9 36.6 1.0
C B:ASN124 3.9 41.2 1.0
CG B:GLU96 4.0 30.7 1.0
N B:MET99 4.0 36.2 1.0
O B:HOH706 4.0 22.0 1.0
O B:ASN124 4.1 31.7 1.0
N B:LEU125 4.1 38.7 1.0
C B:SER98 4.2 30.6 1.0
CA B:ASN124 4.4 35.7 1.0
CA B:SER98 4.4 33.7 1.0
N B:SER98 4.5 36.6 1.0
CA B:MET99 4.5 35.8 1.0
CB B:MET99 4.5 35.2 1.0
CA B:LEU125 4.5 34.1 1.0
CB B:PHE127 4.6 28.8 1.0
N B:ASN124 4.6 39.5 1.0
CG B:PRO97 4.6 27.6 1.0
CG B:MET131 4.6 28.8 1.0
CA B:PRO97 4.8 26.7 1.0
O B:SER98 4.8 36.2 1.0
N B:PRO97 4.8 27.9 1.0
CD B:PRO97 4.9 29.1 1.0
C B:HIS126 4.9 30.5 1.0
N B:PHE127 4.9 30.0 1.0
N B:HIS126 5.0 30.0 1.0

Potassium binding site 3 out of 4 in 7xzo

Go back to Potassium Binding Sites List in 7xzo
Potassium binding site 3 out of 4 in the Formate-Tetrahydrofolate Ligase in Complex with Atp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Formate-Tetrahydrofolate Ligase in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K601

b:33.5
occ:1.00
O C:PRO97 2.7 33.8 1.0
O C:LEU125 2.7 35.9 1.0
O C:ILE123 2.8 31.9 1.0
OE2 C:GLU96 3.1 32.1 1.0
C C:PRO97 3.7 34.9 1.0
CG C:GLU96 3.8 33.7 1.0
CD C:GLU96 3.9 39.2 1.0
C C:ASN124 3.9 36.1 1.0
C C:LEU125 3.9 28.0 1.0
C C:ILE123 4.0 36.6 1.0
O C:ASN124 4.0 43.0 1.0
N C:LEU125 4.1 38.6 1.0
N C:MET99 4.3 40.3 1.0
CA C:ASN124 4.3 39.6 1.0
C C:SER98 4.4 39.1 1.0
CA C:SER98 4.4 39.1 1.0
CB C:PHE127 4.5 30.9 1.0
CA C:LEU125 4.5 37.4 1.0
N C:SER98 4.5 37.9 1.0
N C:ASN124 4.6 41.3 1.0
CA C:PRO97 4.7 33.3 1.0
N C:PRO97 4.7 35.5 1.0
CD C:PRO97 4.7 36.2 1.0
CE C:MET131 4.8 40.9 1.0
CA C:MET99 4.8 38.2 1.0
C C:HIS126 4.8 25.7 1.0
O C:SER98 4.9 35.7 1.0
CB C:PRO97 4.9 35.9 1.0
N C:HIS126 4.9 26.8 1.0
N C:PHE127 5.0 26.4 1.0
O C:ASP122 5.0 33.8 1.0
CB C:MET99 5.0 36.2 1.0

Potassium binding site 4 out of 4 in 7xzo

Go back to Potassium Binding Sites List in 7xzo
Potassium binding site 4 out of 4 in the Formate-Tetrahydrofolate Ligase in Complex with Atp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Formate-Tetrahydrofolate Ligase in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K601

b:30.6
occ:1.00
O D:PRO97 2.8 36.5 1.0
O D:LEU125 2.8 34.9 1.0
O D:ILE123 2.8 34.3 1.0
OE2 D:GLU96 2.9 31.1 1.0
CG D:GLU96 3.7 39.3 1.0
CD D:GLU96 3.7 39.8 1.0
O D:ASN124 3.8 40.5 1.0
C D:ASN124 3.8 40.5 1.0
C D:LEU125 3.9 28.3 1.0
C D:PRO97 4.0 41.8 1.0
C D:ILE123 4.0 34.6 1.0
N D:LEU125 4.1 37.0 1.0
CA D:ASN124 4.3 39.6 1.0
N D:MET99 4.4 41.4 1.0
CB D:PHE127 4.4 28.2 1.0
CA D:LEU125 4.5 34.5 1.0
C D:SER98 4.6 36.9 1.0
N D:ASN124 4.6 33.1 1.0
CE D:MET131 4.6 38.5 1.0
N D:PRO97 4.7 35.5 1.0
CD D:PRO97 4.7 36.0 1.0
CB D:MET99 4.8 37.5 1.0
C D:HIS126 4.8 27.7 1.0
CA D:PRO97 4.8 31.0 1.0
CA D:SER98 4.8 41.3 1.0
N D:SER98 4.9 42.1 1.0
N D:HIS126 4.9 30.9 1.0
CA D:MET99 4.9 36.9 1.0
O D:ASP122 4.9 34.1 1.0
OE1 D:GLU96 4.9 34.1 1.0
O D:HIS126 4.9 27.6 1.0
N D:PHE127 4.9 24.4 1.0
O D:SER98 5.0 37.9 1.0

Reference:

J.C.Yan, C.L.Fang, Y.Gu, Y.Zhang, W.H.Jiang. Berberine Targets Ftfl to Suppress Intestinal Bacteria That Promote Colorectal Carcinogenesis To Be Published.
Page generated: Sat Aug 9 15:17:27 2025

Last articles

Mg in 6KF9
Mg in 6KE2
Mg in 6KF4
Mg in 6KF3
Mg in 6KE4
Mg in 6KE0
Mg in 6KDZ
Mg in 6KDX
Mg in 6KDN
Mg in 6KDM
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy