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Potassium in PDB 7pwf: Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution

Other elements in 7pwf:

The structure of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 37 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220; Page 23, Binding sites: 221 - 230; Page 24, Binding sites: 231 - 240; Page 25, Binding sites: 241 - 250; Page 26, Binding sites: 251 - 260; Page 27, Binding sites: 261 - 266;

Binding sites:

The binding sites of Potassium atom in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution (pdb code 7pwf). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 266 binding sites of Potassium where determined in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution, PDB code: 7pwf:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 266 in 7pwf

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Potassium binding site 1 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
d:K201

b:47.0
occ:1.00
 O d:LEU136 3.2 16.5 1.0
O2' 2:G1122 4.0 10.7 1.0
C d:LEU136 4.1 21.3 1.0

Potassium binding site 2 out of 266 in 7pwf

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Potassium binding site 2 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K201

b:30.1
occ:1.00
 O N:MET4 2.9 9.4 1.0
O N:ARG3 3.0 24.4 1.0
O N:SER6 3.2 16.6 1.0
C N:MET4 3.5 6.2 1.0
N N:SER6 3.9 9.6 1.0
C N:ARG3 4.0 6.3 1.0
N N:HIS5 4.1 4.6 1.0
CA N:MET4 4.1 3.4 1.0
C N:SER6 4.2 8.8 1.0
MG 2:MG1766 4.3 7.2 1.0
CA N:HIS5 4.4 2.2 1.0
OP1 2:C508 4.5 6.6 1.0
N N:MET4 4.6 4.4 1.0
C N:HIS5 4.6 6.4 1.0
CA N:SER6 4.7 7.2 1.0
OP1 2:U720 4.8 0.0 1.0

Potassium binding site 3 out of 266 in 7pwf

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Potassium binding site 3 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K202

b:40.2
occ:1.00
 NH1 N:ARG127 2.8 11.6 1.0
CD N:ARG127 3.2 3.5 1.0
CZ N:ARG127 3.7 12.8 1.0
NE N:ARG127 3.8 10.3 1.0
O N:ARG124 4.1 2.7 1.0
CA N:ARG124 4.1 0.7 1.0
CG N:ARG127 4.2 1.9 1.0
CB N:ARG127 4.2 1.1 1.0
CB N:ARG124 4.3 0.0 1.0
CG N:ARG124 4.3 4.8 1.0
C N:ARG124 4.6 1.1 1.0
OP1 2:U510 4.7 2.9 1.0
NH2 N:ARG127 4.9 13.9 1.0
OP2 2:A718 4.9 0.0 1.0

Potassium binding site 4 out of 266 in 7pwf

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Potassium binding site 4 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K203

b:35.5
occ:1.00
 K 2:K1607 2.8 58.6 1.0
NH1 N:ARG127 2.9 11.6 1.0
NH2 N:ARG127 3.2 13.9 1.0
OP1 2:U510 3.2 2.9 1.0
CZ N:ARG127 3.5 12.8 1.0
O3' 2:G509 3.9 0.5 1.0
CG N:ARG124 4.0 4.8 1.0
P 2:U510 4.2 3.0 1.0
CB N:HIS123 4.2 0.0 1.0
C5' 2:U510 4.4 0.5 1.0
N N:ARG124 4.5 2.0 1.0
C N:HIS123 4.7 0.0 1.0
CA N:ARG124 4.8 0.7 1.0
NE N:ARG127 4.8 10.3 1.0
O5' 2:U510 4.8 3.5 1.0
CD N:ARG124 5.0 7.1 1.0

Potassium binding site 5 out of 266 in 7pwf

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Potassium binding site 5 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K204

b:44.0
occ:1.00
 OG N:SER120 3.1 9.2 1.0
O N:ILE116 3.2 11.3 1.0
N N:SER120 3.6 3.6 1.0
CG2 N:ILE116 3.8 2.8 1.0
CB N:GLU119 4.0 0.0 1.0
C N:ILE116 4.0 7.8 1.0
CA N:SER120 4.0 3.3 1.0
CB N:SER120 4.1 2.8 1.0
CA N:ILE116 4.1 3.1 1.0
C N:GLU119 4.1 2.3 1.0
CB N:ILE116 4.5 2.7 1.0
CA N:GLU119 4.6 0.9 1.0
O2' 2:C508 4.7 5.3 1.0
OE2 N:GLU119 4.7 20.6 1.0
O N:GLU119 4.8 3.3 1.0

Potassium binding site 6 out of 266 in 7pwf

Go back to Potassium Binding Sites List in 7pwf
Potassium binding site 6 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K205

b:44.2
occ:1.00
 OE2 N:GLU119 3.1 20.6 1.0
K N:K206 3.1 42.8 1.0
CG1 N:ILE116 3.2 8.5 1.0
CA N:ILE116 3.8 3.1 1.0
N N:ILE116 3.9 4.9 1.0
CB N:ILE116 4.1 2.7 1.0
CG N:LEU115 4.1 8.1 1.0
CD N:GLU119 4.3 14.1 1.0
C N:LEU115 4.3 7.6 1.0
CD1 N:ILE116 4.4 9.6 1.0
CD2 N:LEU115 4.4 7.4 1.0
CB N:LEU115 4.6 5.4 1.0
O N:LYS112 4.6 12.0 1.0
O N:LEU115 4.6 12.1 1.0
CG2 N:ILE116 4.9 2.8 1.0
NH1 N:ARG99 5.0 13.3 1.0

Potassium binding site 7 out of 266 in 7pwf

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Potassium binding site 7 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K206

b:42.8
occ:1.00
 K N:K205 3.1 44.2 1.0
O N:LYS112 3.1 12.0 1.0
CB N:LYS112 3.3 6.4 1.0
CA N:LYS112 3.5 5.5 1.0
C N:LYS112 3.6 7.1 1.0
CG N:LYS112 3.7 11.1 1.0
CD N:LYS112 3.7 19.1 1.0
CG1 N:ILE116 3.9 8.5 1.0
CD1 N:ILE116 4.1 9.6 1.0
CD2 N:LEU115 4.1 7.4 1.0
CB N:LEU115 4.3 5.4 1.0
CG N:LEU115 4.5 8.1 1.0
N N:ILE116 4.7 4.9 1.0
N N:PHE113 4.8 6.8 1.0
N N:LYS112 4.9 6.5 1.0
CE N:LYS112 5.0 18.2 1.0

Potassium binding site 8 out of 266 in 7pwf

Go back to Potassium Binding Sites List in 7pwf
Potassium binding site 8 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K207

b:38.0
occ:1.00
 O N:THR152 3.1 24.9 1.0
C N:THR152 3.3 28.5 1.0
CE1 N:TYR89 4.2 12.2 1.0
CD1 N:TYR89 4.3 9.7 1.0
O N:LEU149 4.4 27.3 1.0
CG1 N:ILE84 4.5 13.7 1.0
CA N:THR152 4.5 32.6 1.0
O N:LEU150 4.7 24.4 1.0
CB N:ILE84 4.7 11.7 1.0
N N:THR152 4.8 28.1 1.0

Potassium binding site 9 out of 266 in 7pwf

Go back to Potassium Binding Sites List in 7pwf
Potassium binding site 9 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
S:K201

b:19.9
occ:1.00
 O S:LYS25 3.0 19.7 1.0
CG2 S:VAL27 3.8 10.6 1.0
C S:VAL26 3.9 13.4 1.0
N S:VAL27 3.9 12.2 1.0
C S:LYS25 3.9 14.2 1.0
OP2 2:G1222 4.0 11.8 1.0
OP1 2:G1222 4.1 10.1 1.0
CA S:VAL26 4.2 12.9 1.0
O S:VAL26 4.2 19.6 1.0
CG S:ARG57 4.3 21.2 1.0
CA S:VAL27 4.4 14.0 1.0
O S:LYS56 4.4 32.7 1.0
N S:VAL26 4.5 12.4 1.0
P 2:G1222 4.5 18.0 1.0
CD S:LYS25 4.6 17.7 1.0
CA S:ARG57 4.6 21.3 1.0
NZ S:LYS25 4.7 12.6 1.0
CB S:VAL27 4.7 10.0 1.0
CE S:LYS25 4.7 17.3 1.0
CA S:LYS25 4.9 12.5 1.0
CB S:ARG57 5.0 25.4 1.0

Potassium binding site 10 out of 266 in 7pwf

Go back to Potassium Binding Sites List in 7pwf
Potassium binding site 10 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
S:K202

b:30.0
occ:1.00
 CE S:LYS25 3.2 17.3 1.0
NZ S:LYS25 3.8 12.6 1.0
O Z:ARG50 4.2 7.5 1.0
CD S:LYS25 4.4 17.7 1.0
CG S:LYS25 4.6 16.2 1.0
OG Z:SER52 4.6 0.0 1.0
C Z:ARG50 4.9 6.6 1.0
N Z:SER52 4.9 3.9 1.0
CB Z:ARG50 5.0 3.8 1.0

Reference:

D.G.Hiregange, A.Rivalta, T.Bose, E.Breiner-Goldstein, S.Samiya, G.Cimicata, L.Kulakova, E.Zimmerman, A.Bashan, O.Herzberg, A.Yonath. Cryo-Em Structure of the Ancient Eukaryotic Ribosome From the Human Parasite Giardia Lamblia. Nucleic Acids Res. V. 50 1770 2022.
ISSN: ESSN 1362-4962
PubMed: 35100413
DOI: 10.1093/NAR/GKAC046
Page generated: Sat Aug 9 14:05:01 2025

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