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Potassium in PDB 7kus: Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate)
Enzymatic activity of Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate)
All present enzymatic activity of Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate):
3.5.1.48; 3.5.1.62;
3.5.1.48; 3.5.1.62;
Protein crystallography data
The structure of Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate), PDB code: 7kus
was solved by
C.J.Herbst-Gervasoni,
D.W.Christianson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 60.60 / 2.00 |
| Space group | P 31 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 80.489, 80.489, 245.308, 90, 90, 120 |
| R / Rfree (%) | 17.5 / 21.2 |
Other elements in 7kus:
The structure of Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate) also contains other interesting chemical elements:
| Zinc | (Zn) | 1 atom |
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate)
(pdb code 7kus). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate), PDB code: 7kus:
Jump to Potassium binding site number: 1; 2;
In total 2 binding sites of Potassium where determined in the Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate), PDB code: 7kus:
Jump to Potassium binding site number: 1; 2;
Potassium binding site 1 out of 2 in 7kus
Go back to
Potassium Binding Sites List in 7kus
Potassium binding site 1 out
of 2 in the Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate) within 5.0Å range:
|
Potassium binding site 2 out of 2 in 7kus
Go back to
Potassium Binding Sites List in 7kus
Potassium binding site 2 out
of 2 in the Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of Danio Rerio Histone Deacetylase 10 H137A Mutant in Complex with N8-Acetylspermidine (Tetrahedral Intermediate) within 5.0Å range:
|
Reference:
C.J.Herbst-Gervasoni,
D.W.Christianson.
X-Ray Crystallographic Snapshots of Substrate Binding in the Active Site of Histone Deacetylase 10. Biochemistry 2021.
ISSN: ISSN 0006-2960
PubMed: 33449614
DOI: 10.1021/ACS.BIOCHEM.0C00936
Page generated: Sat Aug 9 13:33:17 2025
ISSN: ISSN 0006-2960
PubMed: 33449614
DOI: 10.1021/ACS.BIOCHEM.0C00936
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