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Potassium in PDB 6z8v: X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3L), Which Contains 1-Beta-D- Lactopyranosyl Residue in the Side Chain of THY3 at N3.
Enzymatic activity of X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3L), Which Contains 1-Beta-D- Lactopyranosyl Residue in the Side Chain of THY3 at N3.
All present enzymatic activity of X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3L), Which Contains 1-Beta-D- Lactopyranosyl Residue in the Side Chain of THY3 at N3.:
3.4.21.5;
3.4.21.5;
Protein crystallography data
The structure of X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3L), Which Contains 1-Beta-D- Lactopyranosyl Residue in the Side Chain of THY3 at N3., PDB code: 6z8v
was solved by
R.Troisi,
E.N.Timofeev,
F.Sica,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 82.20 / 1.58 |
| Space group | P 32 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 94.916, 94.916, 125.397, 90, 90, 120 |
| R / Rfree (%) | 18 / 20.6 |
Other elements in 6z8v:
The structure of X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3L), Which Contains 1-Beta-D- Lactopyranosyl Residue in the Side Chain of THY3 at N3. also contains other interesting chemical elements:
| Sodium | (Na) | 1 atom |
Potassium Binding Sites:
The binding sites of Potassium atom in the X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3L), Which Contains 1-Beta-D- Lactopyranosyl Residue in the Side Chain of THY3 at N3.
(pdb code 6z8v). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3L), Which Contains 1-Beta-D- Lactopyranosyl Residue in the Side Chain of THY3 at N3., PDB code: 6z8v:
In total only one binding site of Potassium was determined in the X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3L), Which Contains 1-Beta-D- Lactopyranosyl Residue in the Side Chain of THY3 at N3., PDB code: 6z8v:
Potassium binding site 1 out of 1 in 6z8v
Go back to
Potassium Binding Sites List in 6z8v
Potassium binding site 1 out
of 1 in the X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3L), Which Contains 1-Beta-D- Lactopyranosyl Residue in the Side Chain of THY3 at N3.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of X-Ray Structure of the Complex Between Human Alpha Thrombin and A Thrombin Binding Aptamer Variant (Tba-3L), Which Contains 1-Beta-D- Lactopyranosyl Residue in the Side Chain of THY3 at N3. within 5.0Å range:
|
Reference:
I.Smirnov,
N.Kolganova,
R.Troisi,
F.Sica,
E.Timofeev.
Expanding the Recognition Interface of the Thrombin Binding Aptamer HD1 Through Modification of Residues T3 and T12 Mol.Ther. 2021.
ISSN: ESSN 1525-0024
DOI: 10.1016/J.OMTN.2021.01.004
Page generated: Sat Aug 9 12:51:30 2025
ISSN: ESSN 1525-0024
DOI: 10.1016/J.OMTN.2021.01.004
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