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Potassium in PDB 6z0c: Structure of in Silico Modelled Artificial Maquette-3 Protein

Protein crystallography data

The structure of Structure of in Silico Modelled Artificial Maquette-3 Protein, PDB code: 6z0c was solved by M.Baumgart, M.Roepke, M.E.Muehlbauer, S.Asami, S.L.Mader, K.Fredriksson, M.Groll, A.P.Gamiz-Hernandez, V.R.I.Kaila, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.85
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 62.69, 65.9, 68.26, 89.86, 90.29, 117.36
R / Rfree (%) 18.9 / 22.3

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of in Silico Modelled Artificial Maquette-3 Protein (pdb code 6z0c). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Structure of in Silico Modelled Artificial Maquette-3 Protein, PDB code: 6z0c:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 6z0c

Go back to Potassium Binding Sites List in 6z0c
Potassium binding site 1 out of 2 in the Structure of in Silico Modelled Artificial Maquette-3 Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of in Silico Modelled Artificial Maquette-3 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K301

b:42.1
occ:1.00
O A:GLY103 2.7 35.8 1.0
O A:GLY101 2.8 39.4 1.0
OE1 A:GLN200 2.8 58.3 1.0
O A:HOH413 3.0 43.5 1.0
C A:GLY101 3.8 38.7 1.0
CD A:GLN200 3.8 58.1 1.0
C A:GLY103 3.9 36.9 1.0
C A:SER102 4.1 34.1 1.0
NE2 A:GLN200 4.2 60.2 1.0
N A:GLY103 4.3 35.1 1.0
CA A:SER102 4.3 36.0 1.0
O A:SER102 4.4 37.1 1.0
CD2 A:LEU197 4.4 45.5 1.0
N A:SER102 4.5 36.1 1.0
CA A:GLY103 4.7 36.3 1.0
CA A:GLY101 4.9 40.3 1.0
N A:GLY104 4.9 39.5 1.0

Potassium binding site 2 out of 2 in 6z0c

Go back to Potassium Binding Sites List in 6z0c
Potassium binding site 2 out of 2 in the Structure of in Silico Modelled Artificial Maquette-3 Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of in Silico Modelled Artificial Maquette-3 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K301

b:40.2
occ:1.00
O C:GLY101 2.7 38.3 1.0
O C:GLY103 2.8 36.1 1.0
C C:GLY101 3.9 38.3 1.0
C C:GLY103 4.0 36.5 1.0
C C:SER102 4.2 33.5 1.0
N C:GLY103 4.3 35.3 1.0
CA C:SER102 4.4 34.9 1.0
O C:SER102 4.5 34.5 1.0
CD2 C:LEU197 4.5 47.2 1.0
N C:SER102 4.5 33.5 1.0
CA C:GLY103 4.8 36.1 1.0
CA C:GLY101 4.9 40.3 1.0
N C:GLY104 4.9 38.2 1.0

Reference:

M.Baumgart, M.Roepke, M.E.Muehlbauer, S.Asami, S.L.Mader, K.Fredriksson, M.Groll, A.P.Gamiz-Hernandez, V.R.I.Kaila. Design of Buried Charged Networks in Artificial Proteins To Be Published.
Page generated: Mon Aug 12 18:28:11 2024

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