Potassium in PDB 6qd1: MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 5 (Intermediate Compact Conformation)

The binding sites of Potassium atom in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 5 (Intermediate Compact Conformation) (pdb code 6qd1). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 5 (Intermediate Compact Conformation), PDB code: 6qd1:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 5 (Intermediate Compact Conformation)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 5 (Intermediate Compact Conformation) within 5.0Å range: probe atom residue distance (Å) B Occ A:K401 b:0.8 occ:1.00 O D:TYR178 2.7 98.8 1.0 O C:TYR178 2.7 98.2 1.0 O A:TYR178 2.7 98.3 1.0 O B:TYR178 2.7 98.0 1.0 O A:GLY177 2.7 99.0 1.0 O C:GLY177 2.7 99.0 1.0 O B:GLY177 2.7 99.3 1.0 O D:GLY177 2.8 99.0 1.0 C C:TYR178 3.4 98.2 1.0 C A:TYR178 3.4 98.3 1.0 C D:TYR178 3.4 98.8 1.0 C B:TYR178 3.4 98.0 1.0 HA3 D:GLY179 3.7 0.5 1.0 C A:GLY177 3.8 99.0 1.0 HA3 C:GLY179 3.8 0.1 1.0 C C:GLY177 3.8 99.0 1.0 HA3 B:GLY179 3.8 0.6 1.0 C B:GLY177 3.8 99.3 1.0 HA3 A:GLY179 3.8 0.2 1.0 HA A:TYR178 3.8 98.3 1.0 C D:GLY177 3.8 99.0 1.0 HA C:TYR178 3.8 98.2 1.0 HA B:TYR178 3.8 98.0 1.0 HA D:TYR178 3.8 98.8 1.0 CA A:TYR178 4.1 98.3 1.0 CA C:TYR178 4.1 98.2 1.0 CA B:TYR178 4.1 98.0 1.0 CA D:TYR178 4.1 98.8 1.0 N C:GLY179 4.3 0.1 1.0 N D:GLY179 4.3 0.5 1.0 N A:GLY179 4.3 0.2 1.0 N B:GLY179 4.3 0.6 1.0 N A:TYR178 4.4 98.3 1.0 N C:TYR178 4.4 98.2 1.0 N B:TYR178 4.4 98.0 1.0 N D:TYR178 4.4 98.8 1.0 CA D:GLY179 4.5 0.5 1.0 CA C:GLY179 4.5 0.1 1.0 CA B:GLY179 4.5 0.6 1.0 CA A:GLY179 4.5 0.2 1.0 HA3 A:GLY177 4.6 99.0 1.0 HA3 C:GLY177 4.6 99.0 1.0 HA3 B:GLY177 4.6 99.3 1.0 HA3 D:GLY177 4.7 99.0 1.0 CA A:GLY177 4.8 99.0 1.0 CA C:GLY177 4.8 99.0 1.0 CA B:GLY177 4.8 99.3 1.0 CA D:GLY177 4.9 99.0 1.0 HA2 D:GLY179 4.9 0.5 1.0 HA2 C:GLY179 5.0 0.1 1.0 HA2 B:GLY179 5.0 0.6 1.0 HA2 A:GLY179 5.0 0.2 1.0

Potassium binding site 2 out of 2 in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 5 (Intermediate Compact Conformation)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 5 (Intermediate Compact Conformation) within 5.0Å range: probe atom residue distance (Å) B Occ A:K402 b:66.5 occ:1.00 O A:THR175 2.7 91.0 1.0 O D:THR176 2.7 92.0 1.0 O B:THR176 2.7 93.2 1.0 O C:THR175 2.7 92.6 1.0 O B:THR175 2.7 92.1 1.0 O C:THR176 2.7 92.1 1.0 O A:THR176 2.7 92.1 1.0 O D:THR175 2.8 91.6 1.0 HA A:THR176 3.3 92.1 1.0 HA B:THR176 3.3 93.2 1.0 HA C:THR176 3.4 92.1 1.0 HA D:THR176 3.4 92.0 1.0 C D:THR176 3.5 92.0 1.0 C B:THR176 3.5 93.2 1.0 C A:THR176 3.5 92.1 1.0 C C:THR176 3.5 92.1 1.0 C A:THR175 3.8 91.0 1.0 C C:THR175 3.8 92.6 1.0 C B:THR175 3.8 92.1 1.0 C D:THR175 3.8 91.6 1.0 CA A:THR176 3.8 92.1 1.0 CA B:THR176 3.8 93.2 1.0 CA C:THR176 3.8 92.1 1.0 CA D:THR176 3.8 92.0 1.0 N A:THR176 4.2 92.1 1.0 HG22 A:THR175 4.2 91.0 1.0 N B:THR176 4.2 93.2 1.0 N C:THR176 4.2 92.1 1.0 HG22 C:THR175 4.2 92.6 1.0 N D:THR176 4.2 92.0 1.0 HG22 B:THR175 4.2 92.1 1.0 HG22 D:THR175 4.2 91.6 1.0 N D:GLY177 4.6 99.0 1.0 N B:GLY177 4.6 99.3 1.0 N C:GLY177 4.6 99.0 1.0 N A:GLY177 4.6 99.0 1.0 HA3 D:GLY177 4.6 99.0 1.0 HA3 B:GLY177 4.6 99.3 1.0 HA3 C:GLY177 4.6 99.0 1.0 HA3 A:GLY177 4.6 99.0 1.0 HG23 B:THR176 4.9 93.2 1.0 HG23 C:THR176 4.9 92.1 1.0 HG23 A:THR176 4.9 92.1 1.0 HG23 D:THR176 4.9 92.0 1.0 H A:THR176 4.9 92.1 1.0 H B:THR176 4.9 93.2 1.0 H C:THR176 4.9 92.1 1.0 H D:THR176 5.0 92.0 1.0

R.D.Righetto, N.Biyani, J.Kowal, M.Chami, H.Stahlberg. Retrieving High-Resolution Information From Disordered 2D Crystals By Single-Particle Cryo-Em. Nat Commun V. 10 1722 2019.
ISSN: ESSN 2041-1723
PubMed: 30979902
DOI: 10.1038/S41467-019-09661-5