Potassium in PDB 6gsi: Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis.

The binding sites of Potassium atom in the Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis. (pdb code 6gsi). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis., PDB code: 6gsi:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in the Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis. within 5.0Å range: probe atom residue distance (Å) B Occ A:K701 b:0.7 occ:1.00 O A:GLN474 2.8 0.5 1.0 OE1 A:GLN474 2.9 0.5 1.0 O A:LYS481 2.9 0.7 1.0 O A:ASP479 2.9 0.8 1.0 OG A:SER483 2.9 0.2 1.0 HG A:SER483 3.0 0.2 1.0 HB3 A:GLN474 3.2 0.5 1.0 HB3 A:ASP479 3.2 0.8 1.0 H A:LYS481 3.4 0.7 1.0 HB2 A:ASP479 3.7 0.8 1.0 HA A:SER483 3.9 0.2 1.0 CB A:ASP479 3.9 0.8 1.0 C A:GLN474 3.9 0.5 1.0 C A:LYS481 4.0 0.7 1.0 CD A:GLN474 4.0 0.5 1.0 C A:ASP479 4.0 0.8 1.0 CB A:GLN474 4.1 0.5 1.0 CB A:SER483 4.1 0.2 1.0 H A:SER483 4.1 0.2 1.0 HE2 B:TYR436 4.2 0.6 1.0 N A:SER483 4.2 0.2 1.0 N A:LYS481 4.2 0.7 1.0 HD2 A:HIS516 4.3 0.3 1.0 CA A:SER483 4.3 0.2 1.0 H A:GLN474 4.3 0.5 1.0 HB2 A:LYS481 4.4 0.7 1.0 CA A:GLN474 4.5 0.5 1.0 HB3 A:SER483 4.6 0.2 1.0 CA A:ASP479 4.6 0.8 1.0 O B:GLY575 4.6 0.8 1.0 CG A:GLN474 4.6 0.5 1.0 CA A:LYS481 4.6 0.7 1.0 HA B:TYR576 4.7 0.3 1.0 HB2 A:GLN474 4.7 0.5 1.0 HD1 B:TYR576 4.7 0.3 1.0 HB2 A:SER483 4.7 0.2 1.0 C A:ILE482 4.7 0.2 1.0 HA A:ARG475 4.8 0.0 1.0 N A:GLN474 4.8 0.5 1.0 CE2 B:TYR436 4.9 0.6 1.0 HD2 B:TYR436 5.0 0.6 1.0

Potassium binding site 2 out of 4 in the Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis. within 5.0Å range: probe atom residue distance (Å) B Occ B:K701 b:0.8 occ:1.00 OG B:SER483 2.8 0.0 1.0 OE1 B:GLN474 2.8 0.6 1.0 O B:LYS481 2.9 0.3 1.0 O B:GLN474 2.9 0.6 1.0 HG B:SER483 3.1 0.0 1.0 HB2 B:ASP479 3.5 0.3 1.0 HB3 B:GLN474 3.6 0.6 1.0 O B:ILE482 3.8 0.5 1.0 H B:LYS481 3.8 0.3 1.0 HB3 B:ASP479 3.8 0.3 1.0 O B:ASP479 3.9 0.3 1.0 C B:LYS481 3.9 0.3 1.0 HA B:SER483 3.9 0.0 1.0 CD B:GLN474 4.0 0.6 1.0 C B:ILE482 4.0 0.5 1.0 CB B:SER483 4.1 0.0 1.0 C B:GLN474 4.1 0.6 1.0 CB B:ASP479 4.1 0.3 1.0 HE2 A:TYR436 4.2 0.1 1.0 CA B:SER483 4.3 0.0 1.0 N B:SER483 4.3 0.0 1.0 HB2 B:LYS481 4.4 0.3 1.0 CB B:GLN474 4.5 0.6 1.0 HB3 B:SER483 4.5 0.0 1.0 N B:LYS481 4.5 0.3 1.0 HA B:ARG475 4.7 0.6 1.0 O A:GLY575 4.7 0.0 1.0 HB2 B:SER483 4.7 0.0 1.0 HA A:TYR576 4.7 0.5 1.0 C B:ASP479 4.7 0.3 1.0 H B:GLN474 4.7 0.6 1.0 HA B:ILE482 4.7 0.5 1.0 CA B:LYS481 4.7 0.3 1.0 HE22 B:GLN474 4.8 0.6 1.0 CE2 A:TYR436 4.8 0.1 1.0 N B:ILE482 4.8 0.5 1.0 CA B:GLN474 4.8 0.6 1.0 CG B:GLN474 4.8 0.6 1.0 CA B:ILE482 4.8 0.5 1.0 NE2 B:GLN474 4.8 0.6 1.0 H B:SER483 4.9 0.0 1.0

Potassium binding site 3 out of 4 in the Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis. within 5.0Å range: probe atom residue distance (Å) B Occ C:K701 b:98.7 occ:1.00 O C:ASP479 2.8 0.9 1.0 O C:GLN474 2.8 0.1 1.0 OE1 C:GLN474 2.9 0.1 1.0 HB3 C:ASP479 3.0 0.9 1.0 HE22 C:GLN474 3.3 0.1 1.0 H C:LYS481 3.3 0.6 1.0 HB2 C:ASP479 3.4 0.9 1.0 CD C:GLN474 3.6 0.1 1.0 HA C:ARG475 3.6 0.3 1.0 CB C:ASP479 3.7 0.9 1.0 NE2 C:GLN474 3.7 0.1 1.0 HB3 C:SER483 3.8 0.4 1.0 HB2 C:LYS481 3.8 0.6 1.0 C C:ASP479 3.8 0.9 1.0 O C:LYS481 4.0 0.6 1.0 H C:SER483 4.0 0.4 1.0 HD1 D:TYR576 4.0 0.3 1.0 C C:GLN474 4.0 0.1 1.0 N C:LYS481 4.2 0.6 1.0 HA C:SER483 4.2 0.4 1.0 HA D:TYR576 4.3 0.3 1.0 C C:LYS481 4.3 0.6 1.0 CA C:ASP479 4.4 0.9 1.0 CA C:ARG475 4.4 0.3 1.0 HE2 D:TYR436 4.4 0.9 1.0 HE21 C:GLN474 4.4 0.1 1.0 H C:ALA476 4.5 0.9 1.0 N C:SER483 4.5 0.4 1.0 HB3 C:GLN474 4.6 0.1 1.0 CB C:SER483 4.6 0.4 1.0 CA C:LYS481 4.6 0.6 1.0 CA C:SER483 4.6 0.4 1.0 O C:LEU473 4.6 1.0 1.0 CB C:LYS481 4.6 0.6 1.0 N C:ARG475 4.7 0.3 1.0 CG C:GLN474 4.8 0.1 1.0 HA C:LYS480 4.9 0.0 1.0 CG C:ASP479 4.9 0.9 1.0 N C:ALA476 4.9 0.9 1.0 CD1 D:TYR576 4.9 0.3 1.0 C C:ARG475 4.9 0.3 1.0 N C:LYS480 4.9 0.0 1.0 CE2 D:TYR436 5.0 0.9 1.0 HD2 D:TYR436 5.0 0.9 1.0

Potassium binding site 4 out of 4 in the Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Feline Calicivirus Strain F9 Bound to A Soluble Ectodomain Fragment of Feline Junctional Adhesion Molecule A - Leading to Assembly of A Portal Structure at A Unique Three-Fold Axis. within 5.0Å range: probe atom residue distance (Å) B Occ D:K701 b:0.9 occ:1.00 OE1 D:GLN474 2.9 0.9 1.0 O D:ASP479 2.9 0.2 1.0 O D:GLN474 2.9 0.9 1.0 HA D:ARG475 3.4 0.7 1.0 HE22 D:GLN474 3.5 0.9 1.0 CD D:GLN474 3.7 0.9 1.0 HB3 D:ASP479 3.7 0.2 1.0 HE2 C:TYR436 3.8 0.2 1.0 NE2 D:GLN474 3.9 0.9 1.0 HA D:ILE482 4.0 0.4 1.0 C D:ASP479 4.0 0.2 1.0 C D:GLN474 4.1 0.9 1.0 O D:LYS480 4.2 0.4 1.0 CA D:ARG475 4.2 0.7 1.0 H D:SER483 4.4 0.0 1.0 H D:ALA476 4.4 0.3 1.0 O D:LYS481 4.4 0.7 1.0 C D:ARG475 4.5 0.7 1.0 CE2 C:TYR436 4.5 0.2 1.0 CB D:ASP479 4.5 0.2 1.0 HA C:TYR576 4.5 0.4 1.0 HA D:LYS480 4.5 0.4 1.0 N D:ALA476 4.6 0.3 1.0 HD1 C:TYR576 4.6 0.4 1.0 N D:SER483 4.6 0.0 1.0 N D:ARG475 4.6 0.7 1.0 CG D:ASP479 4.7 0.2 1.0 O C:GLY575 4.7 0.8 1.0 HB3 D:ALA476 4.7 0.3 1.0 HH C:TYR436 4.7 0.2 1.0 HA D:SER483 4.7 0.0 1.0 HE21 D:GLN474 4.7 0.9 1.0 HB3 D:GLN474 4.7 0.9 1.0 C D:LYS480 4.7 0.4 1.0 HB3 D:SER483 4.8 0.0 1.0 CA D:ILE482 4.8 0.4 1.0 HD2 C:TYR436 4.8 0.2 1.0 CA D:ASP479 4.9 0.2 1.0 C D:ILE482 4.9 0.4 1.0 N D:LYS480 4.9 0.4 1.0 CA D:LYS480 5.0 0.4 1.0 OD2 D:ASP479 5.0 0.2 1.0 C D:LYS481 5.0 0.7 1.0 CG D:GLN474 5.0 0.9 1.0

M.J.Conley, M.Mcelwee, L.Azmi, M.Gabrielsen, O.Byron, I.G.Goodfellow, D.Bhella. Calicivirus VP2 Forms A Portal-Like Assembly Following Receptor Engagement. Nature V. 565 377 2019.
ISSN: ESSN 1476-4687
PubMed: 30626974
DOI: 10.1038/S41586-018-0852-1