Potassium in PDB 5xj7: Crystal Structure of Plsy (Ygih), An Integral Membrane Glycerol 3- Phosphate Acyltransferase - the Acyl Phosphate Form

The structure of Crystal Structure of Plsy (Ygih), An Integral Membrane Glycerol 3- Phosphate Acyltransferase - the Acyl Phosphate Form, PDB code: 5xj7 was solved by Y.Tang, Z.Li, D.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.57 / 1.77
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.224, 65.599, 84.678, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 22.5

The binding sites of Potassium atom in the Crystal Structure of Plsy (Ygih), An Integral Membrane Glycerol 3- Phosphate Acyltransferase - the Acyl Phosphate Form (pdb code 5xj7). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Plsy (Ygih), An Integral Membrane Glycerol 3- Phosphate Acyltransferase - the Acyl Phosphate Form, PDB code: 5xj7:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the Crystal Structure of Plsy (Ygih), An Integral Membrane Glycerol 3- Phosphate Acyltransferase - the Acyl Phosphate Form


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Plsy (Ygih), An Integral Membrane Glycerol 3- Phosphate Acyltransferase - the Acyl Phosphate Form within 5.0Å range: probe atom residue distance (Å) B Occ A:K310 b:32.4 occ:1.00 O A:PHE100 2.7 38.6 1.0 O A:PHE97 2.7 58.0 1.0 O A:PRO95 2.8 22.2 1.0 O A:HOH444 2.8 43.1 1.0 O A:PHE98 3.7 28.3 1.0 C A:PHE97 3.7 32.2 1.0 O A:HOH411 3.8 50.4 1.0 C A:PRO95 3.8 19.7 1.0 C A:PHE100 3.9 35.3 1.0 C A:PHE98 4.0 28.8 1.0 CA A:PHE98 4.1 25.7 1.0 N A:PHE100 4.3 35.0 1.0 CG A:PRO95 4.3 30.3 1.0 N A:PHE98 4.3 25.2 1.0 CB A:PRO95 4.4 23.9 1.0 C A:VAL96 4.4 25.4 1.0 N A:PHE97 4.4 22.3 1.0 O A:VAL96 4.5 24.7 1.0 CA A:PRO95 4.5 16.8 1.0 CA A:PHE100 4.6 33.7 1.0 N A:PRO95 4.6 19.6 1.0 CA A:PHE97 4.7 23.4 1.0 O A:HOH438 4.7 51.6 1.0 CD A:PRO95 4.7 23.6 1.0 N A:GLY99 4.8 27.3 1.0 N A:VAL96 4.8 19.1 1.0 CB A:PHE100 4.9 34.9 1.0 N A:LYS101 4.9 33.5 1.0 CA A:VAL96 5.0 22.2 1.0

Potassium binding site 2 out of 2 in the Crystal Structure of Plsy (Ygih), An Integral Membrane Glycerol 3- Phosphate Acyltransferase - the Acyl Phosphate Form


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Plsy (Ygih), An Integral Membrane Glycerol 3- Phosphate Acyltransferase - the Acyl Phosphate Form within 5.0Å range: probe atom residue distance (Å) B Occ A:K311 b:57.9 occ:1.00 O4 A:PO4312 2.5 36.6 0.5 O2 A:PO4312 2.7 47.0 0.5 NZ A:LYS104 3.0 43.2 1.0 O4 A:PO4312 3.0 38.1 0.5 ND2 A:ASN37 3.0 37.5 1.0 O1 A:PO4312 3.2 32.2 0.5 P A:PO4312 3.2 25.9 0.5 ND2 A:ASN180 3.3 25.9 1.0 P A:PO4312 3.4 16.1 0.5 NH2 A:ARG183 3.5 45.9 1.0 O3 A:PO4312 3.5 35.1 0.5 CE1 A:HIS190 3.6 36.5 0.3 CE A:LYS104 3.8 30.4 1.0 OD1 A:ASN180 4.1 25.9 1.0 CG A:ASN180 4.1 21.9 1.0 NE2 A:HIS190 4.2 32.7 0.3 CB A:SER35 4.3 38.0 1.0 O3 A:PO4312 4.3 37.4 0.5 CG A:ASN37 4.3 39.9 1.0 OG A:SER35 4.4 37.6 1.0 O A:HOH437 4.5 29.4 1.0 O1 A:PO4312 4.6 42.2 0.5 O2 A:PO4312 4.6 32.8 0.5 ND1 A:HIS190 4.7 37.2 0.3 CZ A:ARG183 4.8 43.1 1.0 OD1 A:ASN37 4.9 46.8 1.0

Z.Li, Y.Tang, Y.Wu, S.Zhao, J.Bao, Y.Luo, D.Li. Structural Insights Into the Committed Step of Bacterial Phospholipid Biosynthesis. Nat Commun V. 8 1691 2017.
ISSN: ESSN 2041-1723
PubMed: 29167463
DOI: 10.1038/S41467-017-01821-9