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Potassium in PDB 5uuz: Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200

Enzymatic activity of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200

All present enzymatic activity of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200:
1.1.1.205;

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200, PDB code: 5uuz was solved by Y.Kim, N.Maltseva, R.Mulligan, M.Makowska-Grzyska, M.Gu, D.Gollapalli, L.Hedstrom, W.F.Anderson, A.Joachimiak, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.75 / 2.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 82.818, 89.887, 104.620, 99.27, 89.94, 96.15
R / Rfree (%) 22.3 / 25.5

Other elements in 5uuz:

The structure of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 (pdb code 5uuz). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200, PDB code: 5uuz:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Potassium binding site 1 out of 8 in 5uuz

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Potassium binding site 1 out of 8 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K503

b:52.5
occ:1.00
O A:SER471 2.7 35.0 1.0
O A:GLU470 2.7 28.4 1.0
O B:GLY305 2.8 30.8 1.0
O B:CYS308 2.8 24.6 1.0
O A:HIS472 2.9 32.9 1.0
O B:GLY303 3.0 39.2 1.0
C A:SER471 3.2 33.1 1.0
C A:HIS472 3.3 32.7 1.0
C B:CYS308 3.8 25.4 1.0
C A:GLU470 3.8 29.7 1.0
N A:HIS472 3.8 33.1 1.0
N A:PRO473 3.9 34.8 1.0
CA A:SER471 3.9 31.4 1.0
C B:GLY305 3.9 32.0 1.0
CB B:CYS308 4.0 29.8 1.0
CA A:HIS472 4.0 32.0 1.0
C B:PRO304 4.1 31.1 1.0
O B:PRO304 4.1 31.1 1.0
C B:GLY303 4.2 35.5 1.0
CA B:CYS308 4.2 26.9 1.0
N B:CYS308 4.2 24.8 1.0
CA A:PRO473 4.2 36.0 1.0
N B:GLY305 4.3 30.9 1.0
CD2 A:HIS474 4.3 37.1 1.0
N A:SER471 4.3 28.6 1.0
CA B:PRO304 4.5 31.6 1.0
SG B:CYS308 4.6 34.5 1.0
NE2 A:HIS474 4.6 36.8 1.0
CD A:PRO473 4.7 35.4 1.0
CA B:GLY305 4.7 31.7 1.0
N B:THR309 4.8 25.6 1.0
N B:PRO304 4.9 33.3 1.0
N B:SER306 5.0 31.0 1.0

Potassium binding site 2 out of 8 in 5uuz

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Potassium binding site 2 out of 8 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K504

b:52.5
occ:1.00
O C:GLU470 2.6 34.9 1.0
O A:GLY305 2.7 29.2 1.0
O C:SER471 2.8 37.2 1.0
O A:CYS308 2.9 19.8 1.0
O C:HIS472 2.9 28.8 1.0
O A:GLY303 2.9 26.5 1.0
C C:SER471 3.3 32.8 1.0
C C:HIS472 3.4 28.6 1.0
C C:GLU470 3.8 31.4 1.0
C A:CYS308 3.8 22.2 1.0
C A:GLY305 3.9 27.9 1.0
N C:HIS472 3.9 30.0 1.0
CB A:CYS308 3.9 27.2 1.0
CA C:SER471 3.9 31.8 1.0
N C:PRO473 4.0 26.9 1.0
C A:PRO304 4.0 28.1 1.0
C A:GLY303 4.1 28.4 1.0
CA C:HIS472 4.1 29.1 1.0
O A:PRO304 4.2 29.8 1.0
N A:GLY305 4.2 25.1 1.0
CA A:CYS308 4.2 26.1 1.0
N A:CYS308 4.3 28.2 1.0
CD2 C:HIS474 4.3 32.5 1.0
N C:SER471 4.3 29.7 1.0
CA C:PRO473 4.3 28.1 1.0
SG A:CYS308 4.5 33.2 1.0
CA A:PRO304 4.5 27.4 1.0
NE2 C:HIS474 4.5 33.4 1.0
CA A:GLY305 4.6 26.1 1.0
N A:PRO304 4.8 27.8 1.0
N A:THR309 4.9 21.6 1.0
CD C:PRO473 4.9 23.3 1.0
N A:SER306 4.9 25.8 1.0
CA C:GLU470 5.0 30.7 1.0

Potassium binding site 3 out of 8 in 5uuz

Go back to Potassium Binding Sites List in 5uuz
Potassium binding site 3 out of 8 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K502

b:52.5
occ:1.00
O D:GLY305 2.6 29.8 1.0
O B:GLU470 2.7 41.4 1.0
O B:SER471 2.8 42.5 1.0
O D:GLY303 2.9 24.0 1.0
O D:CYS308 3.0 30.2 1.0
O B:HIS472 3.1 34.9 1.0
C B:SER471 3.4 39.3 1.0
C B:HIS472 3.5 35.7 1.0
C D:GLY305 3.8 28.3 1.0
C D:CYS308 3.9 31.5 1.0
C D:PRO304 3.9 22.8 1.0
C B:GLU470 3.9 40.3 1.0
CB D:CYS308 3.9 33.8 1.0
O D:PRO304 4.0 19.2 1.0
N B:PRO473 4.0 37.1 1.0
CA B:SER471 4.0 38.7 1.0
N D:GLY305 4.0 23.9 1.0
C D:GLY303 4.0 23.8 1.0
N B:HIS472 4.1 37.2 1.0
CD2 B:HIS474 4.2 33.0 1.0
CA D:CYS308 4.2 32.7 1.0
N D:CYS308 4.2 31.0 1.0
CA B:PRO473 4.2 36.8 1.0
CA B:HIS472 4.3 35.8 1.0
CA D:PRO304 4.4 22.9 1.0
NE2 B:HIS474 4.4 33.9 1.0
N B:SER471 4.4 39.2 1.0
CA D:GLY305 4.5 26.7 1.0
SG D:CYS308 4.5 36.5 1.0
N D:PRO304 4.7 24.2 1.0
N D:SER306 4.8 29.2 1.0
CD B:PRO473 4.8 36.6 1.0
CA D:SER306 5.0 29.6 1.0
C D:SER306 5.0 31.8 1.0
N D:THR309 5.0 31.5 1.0

Potassium binding site 4 out of 8 in 5uuz

Go back to Potassium Binding Sites List in 5uuz
Potassium binding site 4 out of 8 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K503

b:74.6
occ:1.00
O C:CYS308 2.7 22.1 1.0
O C:GLY305 2.7 30.4 1.0
O D:SER471 2.7 43.9 1.0
O D:GLU470 2.9 40.8 1.0
O D:HIS472 3.0 35.0 1.0
O C:GLY303 3.1 24.9 1.0
C D:SER471 3.3 38.8 1.0
C D:HIS472 3.4 34.5 1.0
C C:CYS308 3.6 21.2 1.0
N D:PRO473 3.8 35.0 1.0
C C:GLY305 3.8 29.2 1.0
CB C:CYS308 3.9 26.0 1.0
N D:HIS472 4.0 33.7 1.0
C D:GLU470 4.0 38.7 1.0
CA D:SER471 4.0 38.3 1.0
CA C:CYS308 4.1 24.4 1.0
CA D:HIS472 4.1 33.4 1.0
CA D:PRO473 4.1 35.1 1.0
C C:PRO304 4.1 27.5 1.0
N C:CYS308 4.1 24.6 1.0
N C:GLY305 4.2 27.9 1.0
O C:PRO304 4.2 27.5 1.0
C C:GLY303 4.3 24.9 1.0
SG C:CYS308 4.4 30.1 1.0
ND1 D:HIS474 4.5 35.8 1.0
N D:SER471 4.5 38.4 1.0
CD D:PRO473 4.5 36.9 1.0
CE1 D:HIS474 4.6 36.2 1.0
CA C:GLY305 4.6 28.6 1.0
CA C:PRO304 4.7 26.8 1.0
N C:THR309 4.7 20.3 1.0
N C:SER306 4.9 28.3 1.0
N C:PRO304 4.9 26.4 1.0

Potassium binding site 5 out of 8 in 5uuz

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Potassium binding site 5 out of 8 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K503

b:95.6
occ:1.00
O E:SER471 2.6 43.2 1.0
O F:CYS308 2.7 24.6 1.0
O E:GLU470 2.7 42.7 1.0
O F:GLY303 2.9 35.7 1.0
O F:GLY305 2.9 35.0 1.0
O E:HIS472 3.0 37.7 1.0
C E:SER471 3.1 40.4 1.0
C E:HIS472 3.4 37.4 1.0
C F:CYS308 3.7 26.1 1.0
CA E:SER471 3.8 40.3 1.0
C E:GLU470 3.8 40.2 1.0
N E:HIS472 3.9 39.1 1.0
CB F:CYS308 3.9 30.0 1.0
N E:PRO473 4.0 37.0 1.0
C F:GLY303 4.0 34.9 1.0
C F:GLY305 4.0 32.6 1.0
CA E:HIS472 4.1 38.2 1.0
CA F:CYS308 4.1 29.9 1.0
C F:PRO304 4.2 31.8 1.0
N F:CYS308 4.3 31.4 1.0
N F:GLY305 4.3 31.2 1.0
N E:SER471 4.3 38.8 1.0
SG F:CYS308 4.3 33.0 1.0
O F:PRO304 4.4 32.7 1.0
CA E:PRO473 4.4 36.6 1.0
ND1 E:HIS474 4.4 34.7 1.0
CE1 E:HIS474 4.5 34.2 1.0
CA F:PRO304 4.6 32.0 1.0
N F:THR309 4.7 24.9 1.0
CA F:GLY305 4.8 32.1 1.0
N F:PRO304 4.8 33.9 1.0
CD E:PRO473 4.8 35.7 1.0
CA F:GLY303 4.9 37.9 1.0

Potassium binding site 6 out of 8 in 5uuz

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Potassium binding site 6 out of 8 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K504

b:52.5
occ:1.00
O E:GLY305 2.6 32.7 1.0
O E:CYS308 2.7 28.8 1.0
O G:SER471 2.7 40.4 1.0
O E:GLY303 2.9 23.1 1.0
O G:GLU470 3.0 34.2 1.0
O G:HIS472 3.1 35.8 1.0
C G:SER471 3.4 36.1 1.0
C G:HIS472 3.5 35.5 1.0
C E:CYS308 3.6 27.3 1.0
CB E:CYS308 3.8 30.8 1.0
C E:GLY305 3.8 33.4 1.0
N G:PRO473 3.9 36.6 1.0
C E:PRO304 4.0 28.2 1.0
CA E:CYS308 4.0 28.5 1.0
CA G:SER471 4.0 33.6 1.0
N E:CYS308 4.1 26.7 1.0
N G:HIS472 4.1 34.5 1.0
C G:GLU470 4.1 34.6 1.0
C E:GLY303 4.1 23.7 1.0
N E:GLY305 4.1 29.5 1.0
O E:PRO304 4.2 31.4 1.0
CA G:PRO473 4.2 36.5 1.0
CA G:HIS472 4.2 35.4 1.0
CD2 G:HIS474 4.3 34.5 1.0
SG E:CYS308 4.4 34.1 1.0
CA E:PRO304 4.5 25.9 1.0
CA E:GLY305 4.5 33.1 1.0
NE2 G:HIS474 4.5 34.9 1.0
N G:SER471 4.5 34.5 1.0
N E:THR309 4.7 25.7 1.0
CD G:PRO473 4.8 36.5 1.0
N E:PRO304 4.8 25.4 1.0
N E:SER306 4.9 32.4 1.0
C E:SER306 5.0 27.3 1.0

Potassium binding site 7 out of 8 in 5uuz

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Potassium binding site 7 out of 8 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K502

b:93.3
occ:1.00
O F:GLU470 2.5 47.7 1.0
O F:SER471 2.7 50.0 1.0
O H:GLY305 2.8 38.7 1.0
O H:GLY303 2.8 45.8 1.0
O F:HIS472 3.0 39.6 1.0
O H:CYS308 3.1 37.9 1.0
C F:SER471 3.1 45.6 1.0
C F:HIS472 3.4 40.5 1.0
C F:GLU470 3.6 45.2 1.0
CA F:SER471 3.8 44.5 1.0
N F:HIS472 3.8 44.2 1.0
C H:GLY305 3.9 37.8 1.0
C H:PRO304 3.9 41.2 1.0
C H:CYS308 4.0 37.4 1.0
N F:PRO473 4.0 40.9 1.0
C H:GLY303 4.0 41.8 1.0
O H:PRO304 4.0 42.7 1.0
CB H:CYS308 4.1 38.6 1.0
CA F:HIS472 4.1 42.3 1.0
N H:GLY305 4.1 39.6 1.0
N F:SER471 4.2 44.8 1.0
CD2 F:HIS474 4.2 46.4 1.0
CA H:PRO304 4.3 41.3 1.0
CA F:PRO473 4.3 39.8 1.0
CA H:CYS308 4.4 37.7 1.0
N H:CYS308 4.5 35.5 1.0
NE2 F:HIS474 4.5 46.6 1.0
SG H:CYS308 4.6 41.6 1.0
CA H:GLY305 4.6 38.3 1.0
N H:PRO304 4.7 41.5 1.0
CD F:PRO473 4.8 41.4 1.0
CA F:GLU470 4.8 43.7 1.0
N H:SER306 5.0 36.2 1.0

Potassium binding site 8 out of 8 in 5uuz

Go back to Potassium Binding Sites List in 5uuz
Potassium binding site 8 out of 8 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K503

b:83.8
occ:1.00
O H:SER471 2.6 35.8 1.0
O H:GLU470 2.7 38.4 1.0
O G:GLY303 2.8 31.0 1.0
O G:GLY305 2.8 33.7 1.0
O G:CYS308 2.9 32.3 1.0
O H:HIS472 3.1 33.7 1.0
O H:HOH609 3.1 16.5 1.0
C H:SER471 3.2 34.4 1.0
C H:HIS472 3.5 35.0 1.0
C H:GLU470 3.8 37.2 1.0
C G:CYS308 3.8 34.4 1.0
CA H:SER471 3.8 34.2 1.0
CB G:CYS308 3.9 35.9 1.0
C G:GLY303 3.9 32.0 1.0
N H:HIS472 4.0 33.4 1.0
C G:GLY305 4.0 32.7 1.0
C G:PRO304 4.0 29.7 1.0
N H:PRO473 4.0 38.2 1.0
O G:PRO304 4.2 28.0 1.0
N G:GLY305 4.2 30.6 1.0
CA H:HIS472 4.2 35.1 1.0
CA G:CYS308 4.2 36.7 1.0
N H:SER471 4.3 34.8 1.0
N G:CYS308 4.3 37.9 1.0
CA G:PRO304 4.4 31.3 1.0
CA H:PRO473 4.4 40.3 1.0
SG G:CYS308 4.4 36.4 1.0
ND1 H:HIS474 4.4 41.6 1.0
CE1 H:HIS474 4.4 42.1 1.0
N G:PRO304 4.7 31.8 1.0
CA G:GLY305 4.7 32.2 1.0
CD H:PRO473 4.9 39.3 1.0
N G:THR309 4.9 35.1 1.0
CA G:GLY303 4.9 35.0 1.0

Reference:

Y.Kim, N.Maltseva, R.Mulligan, M.Makowska-Grzyska, M.Gu, D.Gollapalli, L.Hedstrom, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Bacillus Anthracis in the Complex with Imp and the Inhibitor P200 To Be Published.
Page generated: Mon Aug 12 14:43:48 2024

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