Potassium in PDB 5mvp: Crystal Structure of An A-Dna Dodecamer Containing the Gggccc Motif

The structure of Crystal Structure of An A-Dna Dodecamer Containing the Gggccc Motif, PDB code: 5mvp was solved by J.S.Hardwick, D.Ptchelkine, S.E.V.Phillips, T.Brown, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.46 / 1.61
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	43.256, 43.256, 61.552, 90.00, 90.00, 120.00
R / Rfree (%)	15.3 / 20.9

The binding sites of Potassium atom in the Crystal Structure of An A-Dna Dodecamer Containing the Gggccc Motif (pdb code 5mvp). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of An A-Dna Dodecamer Containing the Gggccc Motif, PDB code: 5mvp:

Potassium binding site 1 out of 1 in the Crystal Structure of An A-Dna Dodecamer Containing the Gggccc Motif


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of An A-Dna Dodecamer Containing the Gggccc Motif within 5.0Å range: probe atom residue distance (Å) B Occ B:K101 b:36.2 occ:0.84 O6 B:DG5 2.7 23.4 1.0 O B:HOH226 2.7 44.5 0.9 O B:HOH219 2.8 38.1 0.9 O6 B:DG6 2.9 22.7 1.0 O B:HOH206 3.0 47.0 1.0 O6 B:DG4 3.0 27.2 1.0 O B:HOH209 3.4 49.3 0.9 C6 B:DG4 3.6 25.9 1.0 C6 B:DG6 3.8 22.2 1.0 O A:HOH135 3.8 58.3 1.0 N4 A:DC8 3.8 24.7 1.0 N7 B:DG4 3.8 27.7 1.0 C6 B:DG5 3.8 23.8 1.0 O A:HOH130 3.9 54.2 1.0 C5 B:DG4 3.9 26.2 1.0 N7 B:DG6 4.1 24.1 1.0 C5 B:DG6 4.2 24.5 1.0 O B:HOH216 4.2 37.8 1.0 N4 A:DC7 4.3 24.6 1.0 N7 B:DG5 4.4 25.2 1.0 C5 B:DG5 4.5 24.1 1.0 N1 B:DG4 4.6 24.4 1.0 O B:HOH227 4.7 54.3 1.0 N1 B:DG6 4.9 24.3 1.0 C8 B:DG4 4.9 29.2 1.0 N1 B:DG5 5.0 22.4 1.0 C4 B:DG4 5.0 26.1 1.0

J.S.Hardwick, D.Ptchelkine, A.H.El-Sagheer, I.Tear, D.Singleton, S.E.V.Phillips, A.N.Lane, T.Brown. 5-Formylcytosine Does Not Change the Global Structure of Dna. Nat. Struct. Mol. Biol. V. 24 544 2017.
ISSN: ESSN 1545-9985
PubMed: 28504696
DOI: 10.1038/NSMB.3411