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Potassium in PDB 5i3t: Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans

Enzymatic activity of Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans

All present enzymatic activity of Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans:
4.2.1.127; 5.4.4.4;

Protein crystallography data

The structure of Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans, PDB code: 5i3t was solved by J.W.Lamattina, M.Carlock, D.J.Koch, W.N.Lanzilotta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.19 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 102.957, 106.757, 188.872, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 20.5

Other elements in 5i3t:

The structure of Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans (pdb code 5i3t). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans, PDB code: 5i3t:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 5i3t

Go back to Potassium Binding Sites List in 5i3t
Potassium binding site 1 out of 4 in the Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K503

b:67.8
occ:1.00
 SG A:CYS209 3.7 38.5 1.0
CE A:MET154 3.7 50.0 1.0
OH A:TYR95 4.0 49.6 1.0
O3 A:BU2501 4.0 54.4 1.0
OH D:TYR74 4.1 41.0 1.0
OD1 D:ASP68 4.2 37.2 1.0
NE2 A:GLN208 4.3 31.9 1.0
CG D:ASP68 4.5 39.1 1.0
CZ D:PHE69 4.5 38.2 1.0
OH A:TYR269 4.5 35.5 1.0
CZ A:TYR95 4.6 41.9 1.0
C3 A:BU2501 4.7 53.2 1.0
OD2 D:ASP68 4.7 42.9 1.0
CG A:PHE206 4.8 28.5 1.0
CD2 A:PHE206 4.9 33.0 1.0
CB A:MET154 4.9 37.0 1.0
CE1 A:TYR95 4.9 38.8 1.0
CD A:GLN208 5.0 29.8 1.0
CD1 A:PHE206 5.0 27.8 1.0

Potassium binding site 2 out of 4 in 5i3t

Go back to Potassium Binding Sites List in 5i3t
Potassium binding site 2 out of 4 in the Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K502

b:75.0
occ:1.00
 SG B:CYS209 3.7 39.9 1.0
OD1 E:ASP68 4.2 39.1 1.0
OH B:TYR95 4.2 39.4 1.0
NE2 B:GLN208 4.2 29.9 1.0
OH B:TYR269 4.3 34.9 1.0
OH E:TYR74 4.4 48.6 1.0
CG E:ASP68 4.4 40.0 1.0
CZ B:TYR95 4.6 34.7 1.0
CZ E:PHE69 4.7 39.0 1.0
O B:HOH646 4.8 41.0 1.0
CE1 B:TYR95 4.8 37.7 1.0
OD2 E:ASP68 4.8 41.0 1.0
CD B:GLN208 4.9 30.8 1.0
CG B:GLN208 4.9 28.6 1.0
CZ3 B:TRP273 4.9 38.2 1.0
CB B:MET154 5.0 34.0 1.0

Potassium binding site 3 out of 4 in 5i3t

Go back to Potassium Binding Sites List in 5i3t
Potassium binding site 3 out of 4 in the Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K504

b:77.2
occ:1.00
 SG D:CYS209 3.6 41.0 1.0
OH D:TYR95 4.1 43.0 1.0
NE2 D:GLN208 4.3 26.7 1.0
OH D:TYR269 4.4 38.0 1.0
OD1 C:ASP68 4.4 41.0 1.0
C3 D:BU2501 4.5 44.7 1.0
OH C:TYR74 4.5 36.9 1.0
CZ D:TYR95 4.6 41.4 1.0
CG C:ASP68 4.6 41.0 1.0
CZ C:PHE69 4.7 35.5 1.0
O D:HOH655 4.7 40.5 1.0
OD2 C:ASP68 4.8 46.8 1.0
O3 D:BU2501 4.8 53.9 1.0
CE1 D:TYR95 4.8 39.5 1.0
CD D:GLN208 4.9 30.2 1.0
CZ3 D:TRP273 4.9 37.9 1.0

Potassium binding site 4 out of 4 in 5i3t

Go back to Potassium Binding Sites List in 5i3t
Potassium binding site 4 out of 4 in the Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K503

b:66.6
occ:1.00
 SG E:CYS209 3.7 42.2 1.0
OH A:TYR74 3.7 42.5 1.0
CD2 E:PHE206 4.3 32.1 1.0
OH E:TYR95 4.3 38.3 1.0
OD1 A:ASP68 4.3 39.3 1.0
CG E:PHE206 4.3 30.2 1.0
NE2 E:GLN208 4.4 31.4 1.0
CE2 E:PHE206 4.5 33.5 1.0
CD1 E:PHE206 4.5 29.6 1.0
CZ E:PHE206 4.6 30.1 1.0
CG A:ASP68 4.6 32.9 1.0
CE1 E:PHE206 4.7 31.6 1.0
CZ A:PHE69 4.8 38.6 1.0
CB E:MET154 4.8 33.4 1.0
OH E:TYR269 4.8 29.6 1.0
SG E:CYS200 4.9 33.0 1.0
CB E:PHE206 4.9 30.3 1.0
OD2 A:ASP68 5.0 35.4 1.0

Reference:

J.W.Lamattina, M.Carlock, D.J.Koch, W.N.Lanzilotta. Native Structure of the Linalool Dehydratase-Isomerase From Castellaniella Defragrans To Be Published.
Page generated: Sat Aug 9 09:15:46 2025

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