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Potassium in PDB 5c8z: Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN

Protein crystallography data

The structure of Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN, PDB code: 5c8z was solved by X.-J.Hu, Q.Qi, W.-J.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.03 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 74.900, 89.590, 113.790, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 16.8

Potassium Binding Sites:

The binding sites of Potassium atom in the Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN (pdb code 5c8z). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN, PDB code: 5c8z:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 5c8z

Go back to Potassium Binding Sites List in 5c8z
Potassium binding site 1 out of 2 in the Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K307

b:24.1
occ:0.83
N A:ASP250 3.2 14.0 1.0
C A:HIS248 3.3 11.9 1.0
CB A:ASP250 3.4 14.9 1.0
CA A:HIS248 3.4 12.5 1.0
N A:VAL251 3.6 15.0 1.0
N A:PRO249 3.6 12.3 1.0
O A:HIS248 3.7 13.0 1.0
CA A:ASP250 3.8 14.7 1.0
CB A:HIS248 3.8 13.5 1.0
CD A:PRO249 3.9 13.8 1.0
CG2 A:VAL251 3.9 16.6 1.0
CG A:ASP250 4.0 27.1 1.0
C A:ASP250 4.2 15.1 1.0
C A:PRO249 4.2 13.3 1.0
OD1 A:ASP250 4.3 23.7 1.0
CG A:PRO249 4.5 15.3 1.0
CA A:PRO249 4.5 12.9 1.0
CB A:VAL251 4.5 14.5 1.0
CG A:HIS248 4.6 14.5 1.0
CA A:VAL251 4.6 13.1 1.0
CD2 A:HIS248 4.7 17.2 1.0
OD2 A:ASP250 4.7 33.5 1.0
N A:HIS248 4.7 13.3 1.0
O A:SER247 4.9 14.3 1.0

Potassium binding site 2 out of 2 in 5c8z

Go back to Potassium Binding Sites List in 5c8z
Potassium binding site 2 out of 2 in the Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K304

b:22.7
occ:0.73
N B:ASP250 3.2 13.8 1.0
C B:HIS248 3.3 13.1 1.0
CB B:ASP250 3.4 17.1 1.0
CA B:HIS248 3.4 12.0 1.0
N B:VAL251 3.5 13.2 1.0
N B:PRO249 3.6 12.2 1.0
O B:HIS248 3.7 13.2 1.0
CA B:ASP250 3.7 14.6 1.0
CB B:HIS248 3.8 14.4 1.0
CG2 B:VAL251 3.9 16.2 1.0
CD B:PRO249 3.9 12.6 1.0
CG B:ASP250 4.0 27.5 1.0
C B:ASP250 4.2 13.9 1.0
C B:PRO249 4.2 12.7 1.0
OD1 B:ASP250 4.4 25.4 1.0
CB B:VAL251 4.4 13.5 1.0
CA B:PRO249 4.5 12.9 1.0
CG B:PRO249 4.5 15.2 1.0
CG B:HIS248 4.6 12.7 1.0
OD2 B:ASP250 4.6 32.7 1.0
CA B:VAL251 4.6 12.6 1.0
CD2 B:HIS248 4.7 15.3 1.0
N B:HIS248 4.8 11.8 1.0
O B:SER247 5.0 14.1 1.0

Reference:

Q.Qi, W.J.Yang, H.J.Zhou, D.M.Ming, K.L.Sun, T.Y.Xu, X.J.Hu, H.Lv. The Structure of A Complex of the Lactonohydrolase Zearalenone Hydrolase with the Hydrolysis Product of Zearalenone at 1.60 Angstrom Resolution. Acta Crystallogr F Struct V. 73 376 2017BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 28695844
DOI: 10.1107/S2053230X17007713
Page generated: Mon Aug 12 13:05:58 2024

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