Atomistry » Potassium » PDB 5avx-5cbu » 5c8z
Atomistry »
  Potassium »
    PDB 5avx-5cbu »
      5c8z »

Potassium in PDB 5c8z: Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN

Protein crystallography data

The structure of Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN, PDB code: 5c8z was solved by X.-J.Hu, Q.Qi, W.-J.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.03 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 74.900, 89.590, 113.790, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 16.8

Potassium Binding Sites:

The binding sites of Potassium atom in the Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN (pdb code 5c8z). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN, PDB code: 5c8z:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 5c8z

Go back to Potassium Binding Sites List in 5c8z
Potassium binding site 1 out of 2 in the Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K307

b:24.1
occ:0.83
N A:ASP250 3.2 14.0 1.0
C A:HIS248 3.3 11.9 1.0
CB A:ASP250 3.4 14.9 1.0
CA A:HIS248 3.4 12.5 1.0
N A:VAL251 3.6 15.0 1.0
N A:PRO249 3.6 12.3 1.0
O A:HIS248 3.7 13.0 1.0
CA A:ASP250 3.8 14.7 1.0
CB A:HIS248 3.8 13.5 1.0
CD A:PRO249 3.9 13.8 1.0
CG2 A:VAL251 3.9 16.6 1.0
CG A:ASP250 4.0 27.1 1.0
C A:ASP250 4.2 15.1 1.0
C A:PRO249 4.2 13.3 1.0
OD1 A:ASP250 4.3 23.7 1.0
CG A:PRO249 4.5 15.3 1.0
CA A:PRO249 4.5 12.9 1.0
CB A:VAL251 4.5 14.5 1.0
CG A:HIS248 4.6 14.5 1.0
CA A:VAL251 4.6 13.1 1.0
CD2 A:HIS248 4.7 17.2 1.0
OD2 A:ASP250 4.7 33.5 1.0
N A:HIS248 4.7 13.3 1.0
O A:SER247 4.9 14.3 1.0

Potassium binding site 2 out of 2 in 5c8z

Go back to Potassium Binding Sites List in 5c8z
Potassium binding site 2 out of 2 in the Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Zhd-Zgr Complex After Zhd Crystal Soaking in Zen For 30MIN within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K304

b:22.7
occ:0.73
N B:ASP250 3.2 13.8 1.0
C B:HIS248 3.3 13.1 1.0
CB B:ASP250 3.4 17.1 1.0
CA B:HIS248 3.4 12.0 1.0
N B:VAL251 3.5 13.2 1.0
N B:PRO249 3.6 12.2 1.0
O B:HIS248 3.7 13.2 1.0
CA B:ASP250 3.7 14.6 1.0
CB B:HIS248 3.8 14.4 1.0
CG2 B:VAL251 3.9 16.2 1.0
CD B:PRO249 3.9 12.6 1.0
CG B:ASP250 4.0 27.5 1.0
C B:ASP250 4.2 13.9 1.0
C B:PRO249 4.2 12.7 1.0
OD1 B:ASP250 4.4 25.4 1.0
CB B:VAL251 4.4 13.5 1.0
CA B:PRO249 4.5 12.9 1.0
CG B:PRO249 4.5 15.2 1.0
CG B:HIS248 4.6 12.7 1.0
OD2 B:ASP250 4.6 32.7 1.0
CA B:VAL251 4.6 12.6 1.0
CD2 B:HIS248 4.7 15.3 1.0
N B:HIS248 4.8 11.8 1.0
O B:SER247 5.0 14.1 1.0

Reference:

Q.Qi, W.J.Yang, H.J.Zhou, D.M.Ming, K.L.Sun, T.Y.Xu, X.J.Hu, H.Lv. The Structure of A Complex of the Lactonohydrolase Zearalenone Hydrolase with the Hydrolysis Product of Zearalenone at 1.60 Angstrom Resolution. Acta Crystallogr F Struct V. 73 376 2017BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 28695844
DOI: 10.1107/S2053230X17007713
Page generated: Mon Aug 12 13:05:58 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy