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Potassium in PDB 4xs1: Salmonella Typhimurium Ahpc T43V Mutant

Enzymatic activity of Salmonella Typhimurium Ahpc T43V Mutant

All present enzymatic activity of Salmonella Typhimurium Ahpc T43V Mutant:
1.11.1.15;

Protein crystallography data

The structure of Salmonella Typhimurium Ahpc T43V Mutant, PDB code: 4xs1 was solved by A.Perkins, K.Nelson, D.Parsonage, L.Poole, P.A.Karplus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.60 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 126.989, 171.880, 135.920, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 21.8

Other elements in 4xs1:

The structure of Salmonella Typhimurium Ahpc T43V Mutant also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Salmonella Typhimurium Ahpc T43V Mutant (pdb code 4xs1). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Salmonella Typhimurium Ahpc T43V Mutant, PDB code: 4xs1:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in 4xs1

Go back to Potassium Binding Sites List in 4xs1
Potassium binding site 1 out of 3 in the Salmonella Typhimurium Ahpc T43V Mutant


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Salmonella Typhimurium Ahpc T43V Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K201

b:83.7
occ:0.50
O A:THR72 2.9 36.3 1.0
O A:HOH301 2.9 50.7 1.0
O A:HOH309 3.0 50.6 1.0
C A:THR72 3.8 37.1 1.0
OG1 A:THR72 4.2 35.5 1.0
CB A:THR72 4.3 35.3 1.0
CA A:ASP73 4.5 34.4 1.0
CA A:PRO99 4.5 36.0 1.0
N A:ASP73 4.6 36.0 1.0
O A:PRO99 4.7 39.5 1.0
CA A:THR72 4.8 35.0 1.0
CB A:PRO99 4.9 38.9 1.0
O A:HOH313 5.0 47.3 1.0

Potassium binding site 2 out of 3 in 4xs1

Go back to Potassium Binding Sites List in 4xs1
Potassium binding site 2 out of 3 in the Salmonella Typhimurium Ahpc T43V Mutant


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Salmonella Typhimurium Ahpc T43V Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K201

b:70.7
occ:1.00
O C:THR72 2.6 33.7 1.0
O C:HOH347 2.7 39.1 1.0
O B:HOH356 2.8 40.8 1.0
O B:THR72 2.9 31.5 1.0
O C:HOH358 3.0 43.7 1.0
O B:HOH355 3.1 49.6 1.0
C C:THR72 3.6 34.5 1.0
C B:THR72 3.9 31.2 1.0
CA C:PRO99 4.2 33.0 1.0
CB C:THR72 4.2 33.1 1.0
OG1 C:THR72 4.3 32.1 1.0
OG1 B:THR72 4.4 31.4 1.0
N C:ASP73 4.4 32.0 1.0
CA C:ASP73 4.4 32.5 1.0
O C:PRO99 4.4 32.6 1.0
CB B:THR72 4.5 31.1 1.0
CA B:PRO99 4.5 30.3 1.0
CA B:ASP73 4.5 31.9 1.0
CB C:PRO99 4.6 32.9 1.0
CA C:THR72 4.6 33.5 1.0
N B:ASP73 4.6 30.1 1.0
O B:PRO99 4.6 29.5 1.0
CB B:PRO99 4.8 31.7 1.0
CA B:THR72 4.8 28.3 1.0
C C:PRO99 4.9 34.1 1.0

Potassium binding site 3 out of 3 in 4xs1

Go back to Potassium Binding Sites List in 4xs1
Potassium binding site 3 out of 3 in the Salmonella Typhimurium Ahpc T43V Mutant


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Salmonella Typhimurium Ahpc T43V Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K201

b:96.9
occ:1.00
O E:THR72 2.7 47.5 1.0
O E:HOH321 2.7 82.6 1.0
O D:HOH386 2.8 59.2 1.0
O D:THR72 2.8 46.4 1.0
O E:HOH322 2.9 53.0 1.0
O D:HOH385 3.1 69.0 1.0
C E:THR72 3.7 50.2 1.0
C D:THR72 3.8 47.4 1.0
CA E:ASP73 4.2 53.1 1.0
CA D:ASP73 4.3 52.9 1.0
OG1 E:THR72 4.3 58.2 1.0
N E:ASP73 4.4 49.2 1.0
N D:ASP73 4.4 48.6 1.0
OG1 D:THR72 4.4 49.9 1.0
CB E:THR72 4.4 50.6 1.0
CA E:PRO99 4.5 48.4 1.0
CB D:THR72 4.5 45.6 1.0
CA D:PRO99 4.6 45.4 1.0
CB D:PRO99 4.7 44.8 1.0
CA E:THR72 4.7 49.4 1.0
O E:PRO99 4.7 50.5 1.0
O D:HOH378 4.8 60.6 1.0
CA D:THR72 4.8 45.2 1.0
CB E:PRO99 4.8 48.9 1.0
OD1 D:ASP73 4.8 67.8 1.0
C E:ASP73 4.9 55.3 1.0
O D:PRO99 4.9 48.8 1.0
C D:ASP73 5.0 53.6 1.0

Reference:

K.J.Nelson, A.Perkins, A.E.D.Van Swearingen, S.Hartman, A.E.Brereton, D.Parsonage, F.R.Salsbury Jr., P.A.Karplus, L.B.Poole. Experimentally Dissecting the Origins of Peroxiredoxin Catalysis. Antioxid.Redox Signal. V. 28 521 2018.
ISSN: ESSN 1557-7716
PubMed: 28375740
DOI: 10.1089/ARS.2016.6922
Page generated: Mon Aug 12 12:39:44 2024

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