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Potassium in PDB 4x0z: Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Protein crystallography data
The structure of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide, PDB code: 4x0z
was solved by
L.J.Stroh,
T.Stehle,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 30.00 / 1.85 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 150.300, 95.890, 128.980, 90.00, 110.17, 90.00 |
| R / Rfree (%) | 16.3 / 19.1 |
Potassium Binding Sites:
The binding sites of Potassium atom in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
(pdb code 4x0z). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 10 binding sites of Potassium where determined in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide, PDB code: 4x0z:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;
In total 10 binding sites of Potassium where determined in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide, PDB code: 4x0z:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;
Potassium binding site 1 out of 10 in 4x0z
Go back to
Potassium Binding Sites List in 4x0z
Potassium binding site 1 out
of 10 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide within 5.0Å range:
|
Potassium binding site 2 out of 10 in 4x0z
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Potassium Binding Sites List in 4x0z
Potassium binding site 2 out
of 10 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 2 of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide within 5.0Å range:
|
Potassium binding site 3 out of 10 in 4x0z
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Potassium Binding Sites List in 4x0z
Potassium binding site 3 out
of 10 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 3 of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide within 5.0Å range:
|
Potassium binding site 4 out of 10 in 4x0z
Go back to
Potassium Binding Sites List in 4x0z
Potassium binding site 4 out
of 10 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 4 of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide within 5.0Å range:
|
Potassium binding site 5 out of 10 in 4x0z
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Potassium Binding Sites List in 4x0z
Potassium binding site 5 out
of 10 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 5 of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide within 5.0Å range:
|
Potassium binding site 6 out of 10 in 4x0z
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Potassium Binding Sites List in 4x0z
Potassium binding site 6 out
of 10 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 6 of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide within 5.0Å range:
|
Potassium binding site 7 out of 10 in 4x0z
Go back to
Potassium Binding Sites List in 4x0z
Potassium binding site 7 out
of 10 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 7 of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide within 5.0Å range:
|
Potassium binding site 8 out of 10 in 4x0z
Go back to
Potassium Binding Sites List in 4x0z
Potassium binding site 8 out
of 10 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 8 of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide within 5.0Å range:
|
Potassium binding site 9 out of 10 in 4x0z
Go back to
Potassium Binding Sites List in 4x0z
Potassium binding site 9 out
of 10 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 9 of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide within 5.0Å range:
|
Potassium binding site 10 out of 10 in 4x0z
Go back to
Potassium Binding Sites List in 4x0z
Potassium binding site 10 out
of 10 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 10 of Jc Polyomavirus Genotype 3 VP1 in Complex with GM1 Oligosaccharide within 5.0Å range:
|
Reference:
L.J.Stroh,
M.S.Maginnis,
B.S.Blaum,
C.D.Nelson,
U.Neu,
G.V.Gee,
B.A.O'hara,
N.Motamedi,
D.Dimaio,
W.J.Atwood,
T.Stehle.
The Greater Affinity of Jc Polyomavirus Capsid For Alpha 2,6-Linked Lactoseries Tetrasaccharide C Than For Other Sialylated Glycans Is A Major Determinant of Infectivity. J.Virol. V. 89 6364 2015.
ISSN: ESSN 1098-5514
PubMed: 25855729
DOI: 10.1128/JVI.00489-15
Page generated: Sat Aug 9 08:04:44 2025
ISSN: ESSN 1098-5514
PubMed: 25855729
DOI: 10.1128/JVI.00489-15
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