Atomistry » Potassium » PDB 4l4d-4mkk » 4ls5
Atomistry »
  Potassium »
    PDB 4l4d-4mkk »
      4ls5 »

Potassium in PDB 4ls5: Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis

Enzymatic activity of Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis

All present enzymatic activity of Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis:
2.3.1.179;

Protein crystallography data

The structure of Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis, PDB code: 4ls5 was solved by F.Trajtenberg, N.Larrieux, A.Buschiazzo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.98 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.513, 87.522, 144.630, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.5

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis (pdb code 4ls5). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis, PDB code: 4ls5:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 4ls5

Go back to Potassium Binding Sites List in 4ls5
Potassium binding site 1 out of 5 in the Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K501

b:18.4
occ:1.00
 OE1 A:GLU348 2.6 23.1 1.0
OD1 A:ASN300 2.7 17.9 1.0
O A:ASN394 2.7 16.4 1.0
O A:ASN300 2.7 20.3 1.0
OG A:SER393 3.0 22.7 1.0
O A:ALA301 3.0 18.8 1.0
C A:ALA301 3.5 21.2 1.0
C A:ASN300 3.6 21.6 1.0
N A:ASN394 3.6 15.6 1.0
CD A:GLU348 3.6 21.4 1.0
CG A:ASN300 3.7 20.2 1.0
CB A:GLU348 3.7 18.1 1.0
C A:ASN394 3.7 17.0 1.0
N A:HIS302 4.0 17.7 1.0
O A:HOH633 4.0 25.5 1.0
CG A:GLU348 4.0 17.8 1.0
CB A:SER393 4.1 18.5 1.0
CB A:ASN300 4.1 19.3 1.0
C A:SER393 4.1 21.4 1.0
O A:HOH625 4.2 21.5 1.0
CA A:SER393 4.2 16.8 1.0
CA A:ASN394 4.2 16.2 1.0
CA A:HIS302 4.2 19.3 1.0
N A:ALA301 4.2 18.4 1.0
CA A:ALA301 4.3 20.1 1.0
CA A:ASN300 4.5 18.8 1.0
OE2 A:GLU348 4.6 23.8 1.0
O A:HOH602 4.7 18.5 1.0
OG A:SER395 4.8 21.4 1.0
N A:SER395 4.9 18.6 1.0
CB A:ASN394 4.9 21.9 1.0
NZ A:LYS334 4.9 18.9 1.0
ND2 A:ASN300 4.9 24.1 1.0

Potassium binding site 2 out of 5 in 4ls5

Go back to Potassium Binding Sites List in 4ls5
Potassium binding site 2 out of 5 in the Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K502

b:28.5
occ:0.69
 K A:K502 0.0 28.5 0.7
K A:K502 0.4 21.7 0.3
O A:LEU208 2.7 21.2 1.0
O A:ASP226 2.7 22.6 1.0
O A:HOH799 2.8 37.1 1.0
O A:LYS206 2.8 19.4 1.0
O A:HOH729 2.9 25.9 1.0
C A:LEU208 3.6 20.2 1.0
C A:LYS206 3.7 20.9 1.0
C A:ASP226 3.9 26.9 1.0
O A:HOH674 4.0 23.6 1.0
CA A:SER209 4.2 24.6 1.0
N A:SER209 4.3 18.8 1.0
CA A:LYS206 4.3 16.2 1.0
CB A:LYS206 4.3 17.2 1.0
O A:HOH793 4.4 34.8 1.0
C A:ALA207 4.4 18.1 1.0
N A:LEU208 4.5 18.1 1.0
O A:ALA207 4.5 18.4 1.0
CA A:GLY227 4.5 18.8 1.0
N A:THR210 4.5 21.8 1.0
CA A:LEU208 4.7 19.0 1.0
CG2 A:THR210 4.7 25.1 1.0
N A:GLY227 4.7 19.1 1.0
O A:HOH916 4.7 48.5 1.0
C A:SER209 4.7 23.3 1.0
OD2 A:ASP226 4.7 45.5 1.0
N A:ALA207 4.7 15.2 1.0
CB A:ASP226 4.9 27.3 1.0
O A:HOH669 4.9 27.8 1.0
CG A:ASP226 4.9 37.2 1.0
CA A:ASP226 5.0 24.9 1.0
CA A:ALA207 5.0 18.7 1.0

Potassium binding site 3 out of 5 in 4ls5

Go back to Potassium Binding Sites List in 4ls5
Potassium binding site 3 out of 5 in the Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K502

b:21.7
occ:0.31
 K A:K502 0.0 21.7 0.3
K A:K502 0.4 28.5 0.7
O A:ASP226 2.7 22.6 1.0
O A:LYS206 2.8 19.4 1.0
O A:HOH799 2.8 37.1 1.0
O A:HOH729 3.0 25.9 1.0
O A:LEU208 3.1 21.2 1.0
C A:LYS206 3.8 20.9 1.0
C A:ASP226 3.9 26.9 1.0
O A:HOH674 4.0 23.6 1.0
C A:LEU208 4.0 20.2 1.0
CB A:LYS206 4.2 17.2 1.0
CA A:LYS206 4.4 16.2 1.0
CA A:SER209 4.5 24.6 1.0
O A:HOH669 4.5 27.8 1.0
CA A:GLY227 4.6 18.8 1.0
N A:SER209 4.6 18.8 1.0
C A:ALA207 4.7 18.1 1.0
O A:HOH793 4.7 34.8 1.0
O A:ALA207 4.7 18.4 1.0
O A:HOH916 4.7 48.5 1.0
N A:GLY227 4.7 19.1 1.0
CB A:ASP226 4.8 27.3 1.0
OD2 A:ASP226 4.8 45.5 1.0
N A:LEU208 4.8 18.1 1.0
N A:THR210 4.8 21.8 1.0
CA A:ASP226 4.9 24.9 1.0
N A:ALA207 4.9 15.2 1.0
O A:HOH681 4.9 26.3 1.0
CG A:ASP226 4.9 37.2 1.0
CG2 A:THR210 4.9 25.1 1.0

Potassium binding site 4 out of 5 in 4ls5

Go back to Potassium Binding Sites List in 4ls5
Potassium binding site 4 out of 5 in the Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K501

b:24.2
occ:1.00
 OD1 B:ASN300 2.7 28.4 1.0
O B:ASN300 2.7 22.9 1.0
OE1 B:GLU348 2.7 28.5 1.0
O B:ASN394 2.8 22.7 1.0
O B:ALA301 2.9 22.4 1.0
OG B:SER393 3.0 25.4 1.0
C B:ALA301 3.5 23.0 1.0
C B:ASN300 3.5 24.5 1.0
N B:ASN394 3.6 23.0 1.0
CD B:GLU348 3.7 26.9 1.0
CG B:ASN300 3.7 27.6 1.0
C B:ASN394 3.8 23.9 1.0
CB B:GLU348 3.8 22.2 1.0
N B:HIS302 4.0 23.2 1.0
O B:HOH668 4.0 26.1 1.0
CB B:SER393 4.1 21.8 1.0
CG B:GLU348 4.1 23.4 1.0
CB B:ASN300 4.1 27.1 1.0
CA B:HIS302 4.1 21.3 1.0
O B:HOH700 4.1 31.4 1.0
C B:SER393 4.2 26.2 1.0
CA B:ASN394 4.2 25.0 1.0
N B:ALA301 4.2 27.4 1.0
CA B:SER393 4.2 23.0 1.0
CA B:ALA301 4.3 24.0 1.0
CA B:ASN300 4.5 24.8 1.0
OE2 B:GLU348 4.7 25.9 1.0
O B:HOH650 4.7 22.9 1.0
NZ B:LYS334 4.8 24.1 1.0
OG B:SER395 4.8 22.5 1.0
CB B:ASN394 4.9 28.5 1.0
N B:SER395 4.9 24.5 1.0
ND2 B:ASN300 4.9 26.8 1.0

Potassium binding site 5 out of 5 in 4ls5

Go back to Potassium Binding Sites List in 4ls5
Potassium binding site 5 out of 5 in the Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Beta-Ketoacyl-Acp Synthase II (Fabf) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K502

b:31.6
occ:1.00
 O B:LYS206 2.7 38.0 1.0
O B:ASP226 2.7 26.7 1.0
O B:HOH778 2.7 46.4 1.0
O B:LEU208 2.8 26.8 1.0
O B:HOH646 3.0 31.0 1.0
O B:HOH693 3.3 27.7 1.0
C B:LYS206 3.7 32.7 1.0
C B:LEU208 3.8 28.0 1.0
C B:ASP226 3.9 27.0 1.0
O B:ALA207 4.2 23.1 1.0
CA B:GLY227 4.2 24.6 1.0
C B:ALA207 4.2 29.6 1.0
CA B:LYS206 4.4 25.2 1.0
CA B:SER209 4.4 25.2 1.0
N B:SER209 4.4 23.5 1.0
CB B:LYS206 4.5 28.3 1.0
N B:GLY227 4.5 28.0 1.0
N B:LEU208 4.5 26.4 1.0
N B:ALA207 4.6 24.3 1.0
CA B:ALA207 4.7 28.2 1.0
CA B:LEU208 4.8 24.1 1.0
O B:HOH801 4.9 36.9 1.0
CA B:ASP226 5.0 28.7 1.0

Reference:

F.Trajtenberg, S.Altabe, N.Larrieux, F.Ficarra, D.De Mendoza, A.Buschiazzo, G.E.Schujman. Structural Insights Into Bacterial Resistance to Cerulenin. Febs J. V. 281 2324 2014.
ISSN: ISSN 1742-464X
PubMed: 24641521
DOI: 10.1111/FEBS.12785
Page generated: Sat Aug 9 07:24:07 2025

Last articles

Na in 9QYS
Na in 9OH9
Na in 9QGB
Na in 9NSM
Na in 9QGE
Na in 9P6B
Na in 9PL2
Na in 9P0F
Na in 9P4Z
Na in 9OW2
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy