Atomistry » Potassium » PDB 3q9c-3rs8 » 3qc5
Atomistry »
  Potassium »
    PDB 3q9c-3rs8 »
      3qc5 »

Potassium in PDB 3qc5: Gspb

Protein crystallography data

The structure of Gspb, PDB code: 3qc5 was solved by T.M.Pyburn, T.M.Iverson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.70 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 33.681, 96.753, 100.192, 90.00, 90.00, 90.00
R / Rfree (%) 14.2 / 17.2

Other elements in 3qc5:

The structure of Gspb also contains other interesting chemical elements:

Sodium (Na) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Gspb (pdb code 3qc5). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Gspb, PDB code: 3qc5:

Potassium binding site 1 out of 1 in 3qc5

Go back to Potassium Binding Sites List in 3qc5
Potassium binding site 1 out of 1 in the Gspb


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Gspb within 5.0Å range:
probe atom residue distance (Å) B Occ
X:K1

b:10.0
occ:1.00
O X:GLU401 2.2 8.3 1.0
OD2 X:ASP490 2.3 9.9 1.0
OD1 X:ASN428 2.3 8.8 1.0
OD1 X:ASP427 2.3 8.9 1.0
OD2 X:ASP399 2.4 10.8 1.0
OD2 X:ASP427 2.4 9.6 1.0
OD1 X:ASP399 2.5 11.7 1.0
CG X:ASP427 2.7 9.3 1.0
CG X:ASP399 2.8 12.2 1.0
CG X:ASP490 3.3 10.1 1.0
CG X:ASN428 3.4 8.3 1.0
C X:GLU401 3.4 8.5 1.0
CB X:ASP490 3.8 9.9 1.0
ND2 X:ASN428 3.9 11.7 1.0
OD1 X:ASN494 4.0 12.3 1.0
CA X:GLU401 4.2 9.4 0.5
CA X:GLU401 4.2 9.4 0.5
CB X:ASP427 4.2 8.4 1.0
N X:GLU401 4.3 10.0 1.0
N X:ASN428 4.3 8.9 1.0
CB X:GLU401 4.3 9.8 0.5
CB X:ASP399 4.3 11.8 1.0
CB X:GLU401 4.3 9.8 0.5
C X:ARG402 4.3 7.8 1.0
OD1 X:ASP490 4.4 9.6 1.0
N X:SER429 4.4 10.3 1.0
O1 X:GOL607 4.4 17.8 0.5
O X:HOH651 4.4 13.1 1.0
N X:ARG402 4.4 8.0 1.0
OG X:SER429 4.4 10.9 1.0
N X:PRO403 4.5 7.6 1.0
CA X:ARG402 4.5 8.1 1.0
CB X:SER429 4.6 10.8 1.0
CB X:ASN428 4.6 9.7 1.0
O X:ARG402 4.7 8.5 1.0
CG X:GLU401 4.8 11.1 0.5
CD X:PRO403 4.8 8.2 1.0
CG X:ASN494 4.9 9.2 1.0
CA X:ASN428 4.9 9.5 1.0
CA X:ASP427 4.9 7.7 1.0
CB X:ASN494 5.0 9.3 1.0
C X:ASP427 5.0 8.1 1.0

Reference:

T.M.Pyburn, B.A.Bensing, Y.Q.Xiong, B.J.Melancon, T.M.Tomasiak, N.J.Ward, V.Yankovskaya, K.M.Oliver, G.Cecchini, G.A.Sulikowski, M.J.Tyska, P.M.Sullam, T.M.Iverson. A Structural Model For Binding of the Serine-Rich Repeat Adhesin Gspb to Host Carbohydrate Receptors. Plos Pathog. V. 7 02112 2011.
ISSN: ISSN 1553-7366
PubMed: 21765814
DOI: 10.1371/JOURNAL.PPAT.1002112
Page generated: Mon Aug 12 09:10:46 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy