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Potassium in PDB 3l0u: The Crystal Structure of Unmodified Trnaphe From Escherichia Coli

Protein crystallography data

The structure of The Crystal Structure of Unmodified Trnaphe From Escherichia Coli, PDB code: 3l0u was solved by R.T.Byrne, A.L.Konevega, M.V.Rodnina, A.A.Antson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.12 / 3.00
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 99.450, 99.450, 110.330, 90.00, 90.00, 120.00
R / Rfree (%) 22.6 / 26.1

Other elements in 3l0u:

The structure of The Crystal Structure of Unmodified Trnaphe From Escherichia Coli also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the The Crystal Structure of Unmodified Trnaphe From Escherichia Coli (pdb code 3l0u). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the The Crystal Structure of Unmodified Trnaphe From Escherichia Coli, PDB code: 3l0u:

Potassium binding site 1 out of 1 in 3l0u

Go back to Potassium Binding Sites List in 3l0u
Potassium binding site 1 out of 1 in the The Crystal Structure of Unmodified Trnaphe From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of The Crystal Structure of Unmodified Trnaphe From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K79

b:72.1
occ:1.00
O6 A:G44 2.6 73.1 1.0
N7 A:G24 3.0 75.4 1.0
N4 A:C25 3.3 77.7 1.0
O6 A:G24 3.5 73.5 1.0
N7 A:A23 3.5 74.5 1.0
N7 A:A9 3.6 71.0 1.0
N6 A:A9 3.8 74.2 1.0
C6 A:G44 3.8 72.8 1.0
C5 A:G24 3.8 74.6 1.0
C5 A:A23 4.0 73.4 1.0
C8 A:A23 4.0 75.9 1.0
C6 A:G24 4.0 73.8 1.0
C5 A:A9 4.0 72.0 1.0
C8 A:G24 4.0 76.3 1.0
C6 A:A9 4.1 73.3 1.0
C4 A:C25 4.2 77.7 1.0
N6 A:A23 4.4 71.1 1.0
C6 A:A23 4.4 72.0 1.0
C8 A:A9 4.4 70.4 1.0
C5 A:C25 4.6 78.3 1.0
C5 A:G44 4.7 74.0 1.0
N1 A:G44 4.7 71.9 1.0
C4 A:A23 4.7 74.5 1.0
N9 A:A23 4.8 76.2 1.0
N7 A:G44 4.8 75.1 1.0
O6 A:G10 4.9 73.2 1.0
OP2 A:A23 4.9 80.5 1.0

Reference:

R.T.Byrne, A.L.Konevega, M.V.Rodnina, A.A.Antson. The Crystal Structure of Unmodified Trnaphe From Escherichia Coli Nucleic Acids Res. V. 38 4154 2010.
ISSN: ISSN 0305-1048
PubMed: 20203084
DOI: 10.1093/NAR/GKQ133
Page generated: Mon Aug 12 08:42:46 2024

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