Potassium in PDB 3h7c: Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression

Enzymatic activity of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression:
3.5.3.12;

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression, PDB code: 3h7c was solved by E.S.Burgie, C.A.Bingman, G.N.Phillips Jr., Center For Eukaryoticstructural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	50.00 / 1.50
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	123.715, 69.932, 50.917, 90.00, 98.40, 90.00
*R / R_free (%)*	14.6 / 17.4

Other elements in 3h7c:

The structure of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Chlorine	(Cl)	2 atoms
Sodium	(Na)	2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression (pdb code 3h7c). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression, PDB code: 3h7c:

Potassium binding site 1 out of 1 in 3h7c

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Potassium Binding Sites List in 3h7c

Potassium binding site 1 out of 1 in the Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression

Mono view

Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Arabidopsis Thaliana Agmatine Deiminase From Cell Free Expression within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
X:K389 b:22.6 occ:0.80	O	X:TRP125	2.5	10.4	1.0
	O	X:HOH710	2.7	35.1	1.0
	O	X:ASP220	2.7	14.9	1.0
	O	X:ASP130	2.7	21.8	1.0
	O	X:HOH555	3.1	20.1	1.0
	OD1	X:ASN222	3.2	15.3	1.0
	C	X:ASP220	3.4	12.8	1.0
	C	X:TRP125	3.7	9.2	1.0
	C	X:ASP130	3.9	18.3	1.0
	CA	X:ASP220	3.9	13.5	1.0
	O	X:GLU219	4.0	15.6	1.0
	ND2	X:ASN185	4.0	12.2	1.0
	CG	X:ASN222	4.1	14.1	1.0
	CB	X:TRP125	4.3	11.2	1.0
	ND2	X:ASN222	4.4	16.7	1.0
	N	X:THR221	4.5	13.4	1.0
	CA	X:GLY126	4.6	11.9	1.0
	SG	X:CYS132	4.6	15.0	1.0
	N	X:GLY126	4.6	9.7	1.0
	CG	X:ASP130	4.7	28.0	1.0
	CB	X:ASP130	4.7	22.6	1.0
	CA	X:GLY131	4.7	15.0	1.0
	CA	X:TRP125	4.7	8.8	1.0
	N	X:GLY131	4.7	15.2	1.0
	O	X:HOH590	4.8	35.7	1.0
	CA	X:THR221	4.8	11.0	1.0
	N	X:ASN222	4.8	10.1	1.0
	C	X:THR221	4.8	11.0	1.0
	NH1	X:ARG186	4.8	10.8	1.0
	OD2	X:ASP130	4.9	27.9	1.0
	CA	X:ASP130	4.9	20.2	1.0
	CB	X:ASP220	4.9	14.7	1.0
	C	X:GLU219	4.9	14.5	1.0
	C	X:GLY131	4.9	14.6	1.0
	N	X:ASP220	5.0	13.3	1.0

Reference:

E.S.Burgie, C.A.Bingman, G.N.Phillips Jr.. Structural Insights Into the Catalytic Mechanism of Arabidopsis Thaliana Agmatine Deiminase To Be Published.

Page generated: Mon Aug 12 08:25:26 2024

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