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Potassium in PDB 3bnp: Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site (A1555G Mutant)

Protein crystallography data

The structure of Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site (A1555G Mutant), PDB code: 3bnp was solved by J.Kondo, E.Westhof, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.59 / 2.70
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 66.350, 66.350, 57.350, 90.00, 90.00, 120.00
R / Rfree (%) 23.1 / 27

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site (A1555G Mutant) (pdb code 3bnp). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site (A1555G Mutant), PDB code: 3bnp:

Potassium binding site 1 out of 1 in 3bnp

Go back to Potassium Binding Sites List in 3bnp
Potassium binding site 1 out of 1 in the Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site (A1555G Mutant)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Homo Sapiens Mitochondrial Ribosomal Decoding Site (A1555G Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K22

b:89.5
occ:1.00
OP2 B:A16 2.4 90.1 1.0
OP2 B:C14 3.8 58.8 1.0
P B:A16 3.9 89.8 1.0
OP1 B:G13 4.0 79.5 1.0
OP1 B:C14 4.3 73.7 1.0
O3' B:A15 4.4 91.6 1.0
P B:C14 4.5 69.9 1.0
OP1 B:A16 4.7 71.2 1.0
O5' B:A16 4.9 88.4 1.0

Reference:

J.Kondo, E.Westhof. The Bacterial and Mitochondrial Ribosomal A-Site Molecular Switches Possess Different Conformational Substates Nucleic Acids Res. V. 36 2654 2008.
ISSN: ISSN 0305-1048
PubMed: 18346970
DOI: 10.1093/NAR/GKN112
Page generated: Sat Aug 9 04:32:49 2025

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