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Potassium in PDB 2vcg: Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17
Protein crystallography data
The structure of Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17, PDB code: 2vcg
was solved by
A.Dickmanns,
A.Strasser,
R.Ficner,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 117.85 / 1.90 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 67.664, 93.633, 121.664, 90.00, 103.99, 90.00 |
| R / Rfree (%) | 15.6 / 20.6 |
Other elements in 2vcg:
The structure of Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17 also contains other interesting chemical elements:
| Bromine | (Br) | 4 atoms |
| Chlorine | (Cl) | 1 atom |
| Zinc | (Zn) | 5 atoms |
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17
(pdb code 2vcg). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17, PDB code: 2vcg:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Potassium where determined in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17, PDB code: 2vcg:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Potassium binding site 1 out of 8 in 2vcg
Go back to
Potassium Binding Sites List in 2vcg
Potassium binding site 1 out
of 8 in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17 within 5.0Å range:
|
Potassium binding site 2 out of 8 in 2vcg
Go back to
Potassium Binding Sites List in 2vcg
Potassium binding site 2 out
of 8 in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17 within 5.0Å range:
|
Potassium binding site 3 out of 8 in 2vcg
Go back to
Potassium Binding Sites List in 2vcg
Potassium binding site 3 out
of 8 in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17 within 5.0Å range:
|
Potassium binding site 4 out of 8 in 2vcg
Go back to
Potassium Binding Sites List in 2vcg
Potassium binding site 4 out
of 8 in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17 within 5.0Å range:
|
Potassium binding site 5 out of 8 in 2vcg
Go back to
Potassium Binding Sites List in 2vcg
Potassium binding site 5 out
of 8 in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 5 of Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17 within 5.0Å range:
|
Potassium binding site 6 out of 8 in 2vcg
Go back to
Potassium Binding Sites List in 2vcg
Potassium binding site 6 out
of 8 in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 6 of Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17 within 5.0Å range:
|
Potassium binding site 7 out of 8 in 2vcg
Go back to
Potassium Binding Sites List in 2vcg
Potassium binding site 7 out
of 8 in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 7 of Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17 within 5.0Å range:
|
Potassium binding site 8 out of 8 in 2vcg
Go back to
Potassium Binding Sites List in 2vcg
Potassium binding site 8 out
of 8 in the Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 8 of Crystal Structure of A Hdac-Like Protein Hdah From Bordetella Sp. with the Bound Inhibitor St-17 within 5.0Å range:
|
Reference:
S.Schaefer,
L.Saunders,
E.Eliseeva,
A.Velena,
M.Jung,
A.Schwienhorst,
A.Strasser,
A.Dickmanns,
R.Ficner,
S.Schlimme,
W.Sippl,
E.Verdin,
M.Jung.
Phenylalanine-Containing Hydroxamic Acids As Selective Inhibitors of Class Iib Histone Deacetylases (Hdacs). Bioorg.Med.Chem. V. 16 2011 2008.
ISSN: ISSN 0968-0896
PubMed: 18054239
DOI: 10.1016/J.BMC.2007.10.092
Page generated: Mon Aug 12 07:09:43 2024
ISSN: ISSN 0968-0896
PubMed: 18054239
DOI: 10.1016/J.BMC.2007.10.092
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