Atomistry » Potassium » PDB 2c44-2frz » 2dcn
Atomistry »
  Potassium »
    PDB 2c44-2frz »
      2dcn »

Potassium in PDB 2dcn: Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)

Enzymatic activity of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)

All present enzymatic activity of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form):
2.7.1.45;

Protein crystallography data

The structure of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form), PDB code: 2dcn was solved by S.Okazaki, H.Onda, A.Suzuki, S.Kuramitsu, R.Masui, T.Yamane, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.37 / 2.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 84.638, 150.229, 154.757, 90.00, 93.73, 90.00
R / Rfree (%) 17.5 / 22.8

Other elements in 2dcn:

The structure of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) also contains other interesting chemical elements:

Magnesium (Mg) 45 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Potassium atom in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) (pdb code 2dcn). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 12 binding sites of Potassium where determined in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form), PDB code: 2dcn:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 1 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K5001

b:21.4
occ:1.00
O A:ASN286 2.8 18.6 1.0
O A:ILE289 2.8 19.4 1.0
O A:THR252 2.8 22.3 1.0
O A:ASP250 2.9 20.1 1.0
O A:GLY291 3.0 20.3 1.0
O A:HOH5048 3.0 19.8 1.0
ND2 A:ASN286 3.2 17.1 1.0
C A:ASN286 3.7 18.7 1.0
C A:GLY291 3.8 19.9 1.0
C A:ILE289 4.0 19.2 1.0
C A:THR252 4.0 22.2 1.0
C A:ASP250 4.0 20.7 1.0
CG A:ASN286 4.1 19.6 1.0
N A:GLY291 4.2 18.3 1.0
CB A:ASP250 4.3 20.6 1.0
CA A:ASP292 4.4 19.9 1.0
N A:ASP292 4.4 20.1 1.0
N A:VAL287 4.4 18.1 1.0
CA A:VAL287 4.5 17.6 1.0
OD2 A:ASP250 4.5 20.1 1.0
N A:THR252 4.5 21.6 1.0
CG2 A:ILE289 4.5 21.4 1.0
O A:HOH5012 4.6 16.3 1.0
CG A:ASP250 4.6 20.5 1.0
CA A:ASN286 4.6 19.3 1.0
C A:VAL251 4.6 21.3 1.0
CA A:GLY291 4.7 19.2 1.0
CB A:ASN286 4.7 19.5 1.0
OD1 A:ASP292 4.7 18.6 1.0
N A:ILE289 4.7 19.3 1.0
C A:ARG290 4.7 18.4 1.0
CA A:ASP250 4.7 20.5 1.0
CA A:THR252 4.8 21.9 1.0
OD1 A:ASN286 4.8 21.5 1.0
CA A:ARG290 4.8 18.4 1.0
N A:ARG290 4.8 18.8 1.0
CA A:ILE289 4.9 19.9 1.0
C A:VAL287 4.9 17.3 1.0
O A:VAL251 4.9 21.7 1.0
N A:VAL251 4.9 20.9 1.0
N A:GLY253 5.0 22.4 1.0

Potassium binding site 2 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 2 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K5002

b:19.9
occ:1.00
O B:ASN286 2.7 17.2 1.0
O B:ILE289 2.8 20.3 1.0
O B:ASP250 2.8 18.4 1.0
O B:THR252 2.9 22.3 1.0
O B:GLY291 3.1 18.6 1.0
O B:HOH5061 3.1 26.6 1.0
ND2 B:ASN286 3.1 14.1 1.0
C B:ASN286 3.7 17.3 1.0
C B:GLY291 3.9 19.0 1.0
C B:ILE289 3.9 19.6 1.0
C B:ASP250 3.9 19.2 1.0
CG B:ASN286 4.0 18.6 1.0
C B:THR252 4.0 22.1 1.0
N B:GLY291 4.1 19.3 1.0
CB B:ASP250 4.3 18.3 1.0
CA B:ASP292 4.4 18.1 1.0
OD2 B:ASP250 4.4 16.5 1.0
N B:THR252 4.4 21.4 1.0
N B:VAL287 4.5 17.7 1.0
CA B:VAL287 4.5 18.0 1.0
CG B:ASP250 4.5 17.8 1.0
N B:ASP292 4.5 19.0 1.0
CA B:ASN286 4.5 17.1 1.0
O B:HOH5013 4.6 16.6 1.0
C B:VAL251 4.6 20.8 1.0
CB B:ASN286 4.6 16.4 1.0
CA B:GLY291 4.7 18.9 1.0
C B:ARG290 4.7 19.0 1.0
CA B:ASP250 4.7 19.0 1.0
OD1 B:ASN286 4.7 23.1 1.0
CG1 B:ILE289 4.7 20.9 1.0
CA B:THR252 4.7 22.2 1.0
N B:ILE289 4.7 19.3 1.0
CA B:ARG290 4.8 19.4 1.0
OD1 B:ASP292 4.8 16.2 1.0
N B:ARG290 4.8 19.1 1.0
CA B:ILE289 4.9 19.9 1.0
C B:VAL287 4.9 18.6 1.0
N B:VAL251 4.9 19.6 1.0
O B:VAL251 5.0 21.8 1.0

Potassium binding site 3 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 3 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K5003

b:22.2
occ:1.00
O C:ASN286 2.8 17.6 1.0
O C:ILE289 2.8 17.7 1.0
O C:THR252 2.8 19.0 1.0
O C:ASP250 2.9 19.7 1.0
O C:HOH5015 2.9 16.6 1.0
ND2 C:ASN286 3.1 17.3 1.0
O C:GLY291 3.1 18.6 1.0
C C:ASN286 3.7 17.2 1.0
C C:GLY291 3.8 18.6 1.0
C C:ASP250 3.9 19.9 1.0
C C:ILE289 4.0 17.7 1.0
CG C:ASN286 4.0 18.9 1.0
C C:THR252 4.0 19.2 1.0
N C:GLY291 4.1 17.6 1.0
CB C:ASP250 4.3 20.2 1.0
OD2 C:ASP250 4.3 19.9 1.0
N C:ASP292 4.3 19.3 1.0
CA C:ASP292 4.4 19.5 1.0
CG C:ASP250 4.4 20.5 1.0
N C:THR252 4.5 19.5 1.0
N C:VAL287 4.5 17.0 1.0
CA C:VAL287 4.5 17.1 1.0
CA C:ASN286 4.6 17.4 1.0
CA C:GLY291 4.6 17.6 1.0
OD1 C:ASN286 4.6 21.4 1.0
CG1 C:ILE289 4.6 18.7 1.0
C C:ARG290 4.6 17.1 1.0
C C:VAL251 4.7 19.8 1.0
CA C:ASP250 4.7 20.3 1.0
O C:HOH5033 4.7 19.2 1.0
CB C:ASN286 4.7 17.1 1.0
OD1 C:ASP292 4.7 18.8 1.0
N C:ILE289 4.7 18.9 1.0
CA C:ARG290 4.7 16.6 1.0
CA C:THR252 4.8 19.4 1.0
N C:ARG290 4.8 17.0 1.0
CA C:ILE289 4.9 18.6 1.0
N C:VAL251 4.9 19.7 1.0
C C:VAL287 4.9 17.7 1.0

Potassium binding site 4 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 4 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K5004

b:20.7
occ:1.00
O D:ASP250 2.7 19.7 1.0
O D:ASN286 2.8 18.4 1.0
O D:THR252 2.8 19.4 1.0
O D:ILE289 2.8 16.4 1.0
O D:HOH5065 3.1 18.4 1.0
O D:GLY291 3.1 20.2 1.0
ND2 D:ASN286 3.3 18.1 1.0
C D:ASN286 3.8 18.2 1.0
C D:ASP250 3.8 19.6 1.0
C D:GLY291 3.9 18.9 1.0
C D:ILE289 4.0 17.3 1.0
C D:THR252 4.0 19.4 1.0
N D:GLY291 4.1 18.2 1.0
CG D:ASN286 4.1 19.3 1.0
CB D:ASP250 4.2 18.7 1.0
OD2 D:ASP250 4.3 17.0 1.0
CG D:ASP250 4.4 17.6 1.0
N D:THR252 4.4 19.2 1.0
CA D:ASP292 4.4 18.4 1.0
N D:ASP292 4.5 18.6 1.0
CA D:ASP250 4.5 19.1 1.0
CA D:VAL287 4.5 17.0 1.0
N D:VAL287 4.6 17.7 1.0
CA D:ASN286 4.6 18.4 1.0
C D:VAL251 4.6 19.5 1.0
CA D:GLY291 4.7 18.8 1.0
CG1 D:ILE289 4.7 16.8 1.0
CB D:ASN286 4.7 18.3 1.0
O D:HOH5063 4.7 15.5 1.0
C D:ARG290 4.7 18.1 1.0
OD1 D:ASP292 4.7 14.9 1.0
N D:ILE289 4.8 18.4 1.0
N D:VAL251 4.8 19.5 1.0
CA D:THR252 4.8 19.3 1.0
CA D:ARG290 4.8 17.3 1.0
N D:ARG290 4.8 17.5 1.0
C D:VAL287 4.9 17.5 1.0
OD1 D:ASN286 4.9 20.9 1.0
CA D:ILE289 4.9 17.8 1.0
CA D:VAL251 4.9 19.4 1.0
N D:GLY253 5.0 19.1 1.0

Potassium binding site 5 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 5 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K5005

b:23.4
occ:1.00
O E:ASP250 2.7 21.2 1.0
O E:ASN286 2.8 19.8 1.0
O E:THR252 2.8 20.6 1.0
O E:ILE289 2.8 20.4 1.0
O E:HOH5029 3.0 25.1 1.0
O E:GLY291 3.0 19.5 1.0
ND2 E:ASN286 3.3 16.8 1.0
C E:ASN286 3.7 19.8 1.0
C E:GLY291 3.8 19.8 1.0
C E:ASP250 3.8 21.1 1.0
C E:ILE289 4.0 20.6 1.0
C E:THR252 4.0 20.4 1.0
N E:GLY291 4.2 18.9 1.0
CB E:ASP250 4.2 20.8 1.0
CG E:ASN286 4.2 20.7 1.0
CA E:ASP292 4.3 19.4 1.0
CG E:ASP250 4.3 20.7 1.0
N E:ASP292 4.4 20.0 1.0
N E:THR252 4.4 20.4 1.0
OD2 E:ASP250 4.4 19.1 1.0
C E:VAL251 4.5 21.1 1.0
N E:VAL287 4.5 19.6 1.0
CG2 E:ILE289 4.5 21.2 1.0
CA E:ASN286 4.6 19.6 1.0
CA E:ASP250 4.6 21.2 1.0
CA E:VAL287 4.6 20.0 1.0
O E:HOH5021 4.6 23.4 1.0
C E:ARG290 4.6 18.9 1.0
CA E:GLY291 4.6 18.7 1.0
CA E:THR252 4.7 20.3 1.0
CB E:ASN286 4.7 19.2 1.0
CA E:ARG290 4.7 19.5 1.0
N E:ILE289 4.7 20.8 1.0
OD1 E:ASP292 4.7 15.0 1.0
N E:VAL251 4.8 21.3 1.0
N E:ARG290 4.8 20.4 1.0
O E:VAL251 4.8 21.2 1.0
CA E:ILE289 4.8 21.4 1.0
CA E:VAL251 4.9 21.0 1.0
OD1 E:ASP250 4.9 21.2 1.0
C E:VAL287 4.9 20.5 1.0
N E:GLY253 5.0 20.1 1.0

Potassium binding site 6 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 6 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K5006

b:24.3
occ:1.00
O F:ASN286 2.7 19.1 1.0
O F:THR252 2.8 19.2 1.0
O F:ASP250 2.8 18.4 1.0
O F:HOH5015 2.8 17.3 1.0
O F:ILE289 2.8 18.9 1.0
O F:GLY291 3.1 19.8 1.0
ND2 F:ASN286 3.2 17.2 1.0
C F:ASN286 3.7 18.6 1.0
C F:GLY291 3.9 19.3 1.0
C F:ASP250 3.9 18.5 1.0
C F:THR252 3.9 19.4 1.0
C F:ILE289 4.0 19.6 1.0
CG F:ASN286 4.0 19.2 1.0
CB F:ASP250 4.2 18.1 1.0
N F:GLY291 4.3 18.8 1.0
CA F:ASP292 4.3 18.4 1.0
N F:THR252 4.4 19.0 1.0
OD2 F:ASP250 4.4 18.0 1.0
CG F:ASP250 4.4 17.7 1.0
N F:ASP292 4.4 19.0 1.0
CA F:ASN286 4.5 17.9 1.0
C F:VAL251 4.5 18.8 1.0
N F:VAL287 4.5 18.7 1.0
CA F:VAL287 4.6 19.4 1.0
CA F:ASP250 4.6 18.3 1.0
CB F:ASN286 4.6 17.5 1.0
OD1 F:ASP292 4.7 18.7 1.0
CA F:THR252 4.7 19.3 1.0
O F:HOH5012 4.7 15.1 1.0
CG1 F:ILE289 4.7 20.8 1.0
CA F:GLY291 4.7 18.7 1.0
C F:ARG290 4.8 19.1 1.0
OD1 F:ASN286 4.8 21.8 1.0
CA F:ARG290 4.8 19.0 1.0
N F:ILE289 4.8 20.2 1.0
N F:VAL251 4.9 18.6 1.0
N F:ARG290 4.9 19.2 1.0
O F:VAL251 4.9 18.0 1.0
N F:GLY253 4.9 19.1 1.0
CA F:ILE289 4.9 20.3 1.0
C F:VAL287 5.0 19.9 1.0
CA F:VAL251 5.0 18.4 1.0

Potassium binding site 7 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 7 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K5007

b:26.1
occ:1.00
O G:ASN286 2.8 21.8 1.0
O G:THR252 2.8 20.0 1.0
O G:HOH5016 2.8 17.3 1.0
O G:ASP250 2.9 19.8 1.0
O G:ILE289 2.9 20.4 1.0
ND2 G:ASN286 3.1 18.5 1.0
O G:GLY291 3.1 22.6 1.0
C G:ASN286 3.8 21.4 1.0
C G:GLY291 3.8 22.4 1.0
C G:THR252 4.0 20.4 1.0
C G:ASP250 4.0 20.9 1.0
C G:ILE289 4.1 20.7 1.0
CG G:ASN286 4.1 21.3 1.0
N G:GLY291 4.2 21.4 1.0
CB G:ASP250 4.3 20.9 1.0
CA G:ASP292 4.3 22.1 1.0
N G:ASP292 4.4 22.5 1.0
N G:THR252 4.4 20.9 1.0
CA G:VAL287 4.5 20.7 1.0
OD2 G:ASP250 4.5 20.4 1.0
N G:VAL287 4.6 21.0 1.0
CG G:ASP250 4.6 20.7 1.0
O G:HOH5011 4.6 14.2 1.0
C G:VAL251 4.6 21.0 1.0
CA G:ASN286 4.6 21.1 1.0
CA G:GLY291 4.7 21.9 1.0
CA G:THR252 4.7 20.2 1.0
CA G:ASP250 4.7 21.1 1.0
C G:ARG290 4.7 21.5 1.0
CB G:ASN286 4.8 21.0 1.0
OD1 G:ASP292 4.8 22.7 1.0
OD1 G:ASN286 4.8 22.7 1.0
CG1 G:ILE289 4.8 22.2 1.0
CA G:ARG290 4.8 20.9 1.0
O G:VAL251 4.8 21.6 1.0
N G:ILE289 4.9 20.8 1.0
N G:ARG290 4.9 21.0 1.0
C G:VAL287 4.9 20.6 1.0
N G:GLY253 5.0 20.2 1.0
N G:VAL251 5.0 20.8 1.0
CA G:ILE289 5.0 21.1 1.0

Potassium binding site 8 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 8 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K5008

b:23.1
occ:1.00
O H:ASN286 2.6 18.5 1.0
O H:ASP250 2.7 18.1 1.0
O H:ILE289 2.8 20.4 1.0
O H:THR252 2.9 19.6 1.0
O H:HOH5044 3.1 13.1 1.0
O H:GLY291 3.2 21.0 1.0
ND2 H:ASN286 3.2 17.4 1.0
C H:ASN286 3.6 18.6 1.0
C H:ASP250 3.8 18.2 1.0
C H:GLY291 3.9 20.6 1.0
C H:ILE289 4.0 20.4 1.0
CG H:ASN286 4.1 19.2 1.0
C H:THR252 4.1 19.1 1.0
CB H:ASP250 4.2 17.6 1.0
N H:GLY291 4.3 20.5 1.0
OD2 H:ASP250 4.4 17.5 1.0
CA H:ASP292 4.4 19.2 1.0
N H:THR252 4.4 18.9 1.0
CG H:ASP250 4.4 17.7 1.0
CA H:VAL287 4.4 18.7 1.0
N H:VAL287 4.5 18.7 1.0
N H:ASP292 4.5 20.2 1.0
CA H:ASN286 4.5 18.3 1.0
CA H:ASP250 4.6 17.9 1.0
C H:VAL251 4.6 19.4 1.0
CB H:ASN286 4.6 17.8 1.0
O H:HOH5025 4.6 23.0 1.0
CG1 H:ILE289 4.7 21.3 1.0
C H:ARG290 4.8 20.6 1.0
CA H:GLY291 4.8 20.6 1.0
C H:VAL287 4.8 18.9 1.0
N H:ILE289 4.8 20.1 1.0
CA H:THR252 4.8 19.1 1.0
OD1 H:ASN286 4.8 21.4 1.0
N H:ARG290 4.8 20.1 1.0
CA H:ARG290 4.8 20.2 1.0
N H:VAL251 4.8 18.6 1.0
OD1 H:ASP292 4.9 18.3 1.0
CA H:ILE289 4.9 20.5 1.0
CA H:VAL251 5.0 19.0 1.0
O H:VAL251 5.0 20.2 1.0

Potassium binding site 9 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 9 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K5009

b:21.6
occ:1.00
O I:THR252 2.8 18.0 1.0
O I:ASP250 2.8 18.4 1.0
O I:ASN286 2.8 18.5 1.0
O I:ILE289 3.0 18.8 1.0
O I:HOH5047 3.0 20.0 1.0
O I:GLY291 3.2 17.2 1.0
ND2 I:ASN286 3.2 16.2 1.0
C I:ASN286 3.8 18.2 1.0
C I:GLY291 3.8 17.3 1.0
C I:ASP250 3.9 18.2 1.0
C I:THR252 3.9 18.2 1.0
CG I:ASN286 4.0 19.2 1.0
C I:ILE289 4.1 18.7 1.0
N I:GLY291 4.2 17.1 1.0
CB I:ASP250 4.3 18.8 1.0
CA I:ASP292 4.3 18.2 1.0
N I:THR252 4.4 18.3 1.0
OD2 I:ASP250 4.4 20.0 1.0
N I:ASP292 4.4 17.6 1.0
CG I:ASP250 4.4 20.2 1.0
CA I:VAL287 4.5 18.9 1.0
N I:VAL287 4.5 18.4 1.0
C I:VAL251 4.6 18.4 1.0
CA I:ASP250 4.6 18.7 1.0
CA I:ASN286 4.6 18.2 1.0
CA I:THR252 4.6 18.2 1.0
O I:HOH5037 4.7 18.3 1.0
CA I:GLY291 4.7 16.6 1.0
CB I:ASN286 4.7 18.0 1.0
OD1 I:ASN286 4.7 21.4 1.0
OD1 I:ASP292 4.7 19.4 1.0
C I:ARG290 4.7 17.1 1.0
N I:VAL251 4.8 18.2 1.0
CA I:ARG290 4.8 17.2 1.0
CG1 I:ILE289 4.9 19.5 1.0
N I:ILE289 4.9 19.4 1.0
C I:VAL287 4.9 19.4 1.0
N I:ARG290 4.9 18.1 1.0
CA I:VAL251 4.9 17.9 1.0
N I:GLY253 5.0 18.4 1.0
O I:VAL251 5.0 19.6 1.0
CB I:THR252 5.0 18.8 1.0

Potassium binding site 10 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 10 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:K5010

b:20.2
occ:1.00
O J:ASP250 2.8 18.6 1.0
O J:ASN286 2.8 21.8 1.0
O J:ILE289 2.8 20.2 1.0
O J:THR252 2.9 19.9 1.0
O J:HOH5021 3.0 16.3 1.0
O J:GLY291 3.1 20.9 1.0
ND2 J:ASN286 3.2 20.0 1.0
C J:ASN286 3.8 21.5 1.0
C J:GLY291 3.8 20.4 1.0
C J:ASP250 3.8 19.3 1.0
C J:ILE289 3.9 20.3 1.0
C J:THR252 4.1 19.6 1.0
CG J:ASN286 4.1 22.9 1.0
CB J:ASP250 4.2 19.3 1.0
N J:GLY291 4.2 20.1 1.0
CA J:ASP292 4.4 20.2 1.0
OD2 J:ASP250 4.4 18.2 1.0
CG J:ASP250 4.4 19.7 1.0
N J:ASP292 4.4 20.1 1.0
N J:THR252 4.5 19.5 1.0
CA J:ASP250 4.6 19.6 1.0
CA J:VAL287 4.6 19.6 1.0
C J:VAL251 4.6 19.2 1.0
CA J:ASN286 4.6 22.2 1.0
OD1 J:ASP292 4.6 19.6 1.0
N J:VAL287 4.6 20.6 1.0
CA J:GLY291 4.7 20.2 1.0
CG2 J:ILE289 4.7 21.0 1.0
O J:HOH5112 4.7 20.8 1.0
C J:ARG290 4.7 19.9 1.0
CB J:ASN286 4.7 21.4 1.0
CA J:ARG290 4.7 19.4 1.0
OD1 J:ASN286 4.8 25.3 1.0
N J:ARG290 4.8 19.9 1.0
N J:ILE289 4.8 20.6 1.0
N J:VAL251 4.8 19.3 1.0
CA J:ILE289 4.8 20.6 1.0
CA J:THR252 4.8 19.4 1.0
C J:VAL287 4.9 19.8 1.0
CA J:VAL251 5.0 18.9 1.0
O J:VAL287 5.0 19.4 1.0

Reference:

S.Okazaki, H.Onda, A.Suzuki, S.Kuramitsu, R.Masui, T.Yamane. Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate To Be Published.
Page generated: Mon Aug 12 06:16:00 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy