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Potassium in PDB 2cz8: Crystal Structure of TT0972 Protein From Thermus Thermophilus

Protein crystallography data

The structure of Crystal Structure of TT0972 Protein From Thermus Thermophilus, PDB code: 2cz8 was solved by M.Kumei, E.Inagaki, N.Nakano, A.Shinkai, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.28 / 1.50
Space group P 3
Cell size a, b, c (Å), α, β, γ (°) 66.360, 66.360, 124.566, 90.00, 90.00, 120.00
R / Rfree (%) 20.5 / 22.9

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of TT0972 Protein From Thermus Thermophilus (pdb code 2cz8). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of TT0972 Protein From Thermus Thermophilus, PDB code: 2cz8:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 2cz8

Go back to Potassium Binding Sites List in 2cz8
Potassium binding site 1 out of 4 in the Crystal Structure of TT0972 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of TT0972 Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1150

b:11.6
occ:0.33
OE1 A:GLU19 2.8 13.1 1.0
OE2 A:GLU19 3.1 13.8 1.0
CD A:GLU19 3.3 11.5 1.0
O A:HOH2107 3.9 18.2 1.0
CD1 A:LEU18 4.0 13.6 1.0
CB A:LEU18 4.2 10.8 1.0
CG A:LEU18 4.5 11.3 1.0
CG A:GLU19 4.8 11.3 1.0
O A:HOH2131 4.8 33.2 1.0
N A:GLU19 4.9 12.1 1.0
N A:LEU18 5.0 12.7 1.0

Potassium binding site 2 out of 4 in 2cz8

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Potassium binding site 2 out of 4 in the Crystal Structure of TT0972 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of TT0972 Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1151

b:29.8
occ:1.00
OE1 C:GLU19 2.6 20.6 1.0
OE1 D:GLU19 2.8 16.3 1.0
OE2 C:GLU19 3.1 15.6 1.0
CD C:GLU19 3.2 19.1 1.0
OE2 D:GLU19 3.3 14.7 1.0
CD D:GLU19 3.4 15.0 1.0
O D:HOH2111 3.9 20.6 1.0
CD1 D:LEU18 4.0 15.1 1.0
CD1 C:LEU18 4.1 18.0 1.0
CB D:LEU18 4.2 11.3 1.0
CB C:LEU18 4.2 19.8 1.0
CG D:LEU18 4.5 13.0 1.0
CG C:LEU18 4.6 20.1 1.0
CG C:GLU19 4.7 19.5 1.0
CG D:GLU19 4.9 12.7 1.0
N C:GLU19 4.9 17.4 1.0
N D:GLU19 5.0 11.2 1.0
N D:LEU18 5.0 11.6 1.0

Potassium binding site 3 out of 4 in 2cz8

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Potassium binding site 3 out of 4 in the Crystal Structure of TT0972 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of TT0972 Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K1152

b:10.2
occ:0.33
OE1 E:GLU19 2.8 13.2 1.0
OE2 E:GLU19 3.1 14.5 1.0
CD E:GLU19 3.3 11.8 1.0
O E:HOH2116 4.0 18.8 1.0
CD1 E:LEU18 4.0 15.1 1.0
CB E:LEU18 4.3 10.8 1.0
CG E:LEU18 4.5 11.3 1.0
O E:HOH2148 4.7 33.8 1.0
CG E:GLU19 4.8 11.9 1.0
N E:GLU19 4.9 11.9 1.0
N E:LEU18 5.0 12.6 1.0

Potassium binding site 4 out of 4 in 2cz8

Go back to Potassium Binding Sites List in 2cz8
Potassium binding site 4 out of 4 in the Crystal Structure of TT0972 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of TT0972 Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K1153

b:30.5
occ:1.00
OE1 G:GLU19 2.6 20.9 1.0
OE1 H:GLU19 2.7 15.9 1.0
OE2 G:GLU19 3.0 15.7 1.0
CD G:GLU19 3.2 19.8 1.0
OE2 H:GLU19 3.3 14.7 1.0
CD H:GLU19 3.4 14.7 1.0
O H:HOH2114 3.8 21.4 1.0
CD1 H:LEU18 4.1 14.9 1.0
CD1 G:LEU18 4.2 18.1 1.0
CB H:LEU18 4.2 11.4 1.0
CB G:LEU18 4.3 19.4 1.0
CG H:LEU18 4.4 13.0 1.0
CG G:GLU19 4.7 19.3 1.0
CG G:LEU18 4.7 20.4 1.0
CG H:GLU19 4.8 12.4 1.0
N H:LEU18 4.9 11.8 1.0
N H:GLU19 4.9 11.6 1.0
N G:GLU19 4.9 17.6 1.0

Reference:

M.Kumei, E.Inagaki, N.Nakano, A.Shinkai, S.Yokoyama. Crystal Structure of TT0972 Protein From Thermus Thermophilus To Be Published.
Page generated: Mon Aug 12 06:14:41 2024

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