Atomistry » Potassium » PDB 1yjn-2aaq » 1zz0
Atomistry »
  Potassium »
    PDB 1yjn-2aaq »
      1zz0 »

Potassium in PDB 1zz0: Crystal Structure of A Hdac-Like Protein with Acetate Bound

Protein crystallography data

The structure of Crystal Structure of A Hdac-Like Protein with Acetate Bound, PDB code: 1zz0 was solved by T.K.Nielsen, C.Hildmann, A.Dickmanns, A.Schwienhorst, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.86 / 1.60
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.586, 127.886, 251.681, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 18.6

Other elements in 1zz0:

The structure of Crystal Structure of A Hdac-Like Protein with Acetate Bound also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of A Hdac-Like Protein with Acetate Bound (pdb code 1zz0). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the Crystal Structure of A Hdac-Like Protein with Acetate Bound, PDB code: 1zz0:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Potassium binding site 1 out of 8 in 1zz0

Go back to Potassium Binding Sites List in 1zz0
Potassium binding site 1 out of 8 in the Crystal Structure of A Hdac-Like Protein with Acetate Bound


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of A Hdac-Like Protein with Acetate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1449

b:12.4
occ:1.00
 O A:ASP180 2.5 10.1 1.0
O A:LEU202 2.7 11.1 1.0
O A:HIS182 2.7 9.8 1.0
OG A:SER201 2.8 11.5 1.0
OD2 A:ASP178 2.9 13.5 1.0
O A:ASP178 3.0 11.6 1.0
CG A:ASP178 3.1 12.8 1.0
OD1 A:ASP178 3.5 15.1 1.0
C A:ASP180 3.6 9.3 1.0
C A:ASP178 3.7 12.5 1.0
C A:LEU202 3.7 11.8 1.0
C A:HIS182 3.8 10.3 1.0
N A:ASP180 3.9 9.5 1.0
N A:LEU202 3.9 9.6 1.0
CB A:SER201 3.9 10.8 1.0
CB A:ASP178 3.9 12.1 1.0
CB A:HIS203 4.0 10.7 1.0
N A:GLY184 4.0 10.1 1.0
CA A:SER201 4.2 10.5 1.0
CA A:ASP180 4.2 9.5 1.0
C A:TRP179 4.2 10.2 1.0
CB A:ASP180 4.3 9.0 1.0
C A:SER201 4.3 11.2 1.0
CA A:HIS183 4.3 10.2 1.0
N A:TRP179 4.3 10.7 1.0
ND1 A:HIS203 4.3 12.0 1.0
CA A:TRP179 4.4 11.2 1.0
N A:HIS182 4.4 9.0 1.0
CA A:ASP178 4.4 11.3 1.0
CE1 A:HIS142 4.5 13.4 1.0
ND1 A:HIS142 4.5 12.4 1.0
N A:HIS183 4.5 9.6 1.0
CA A:LEU202 4.5 10.6 1.0
C A:HIS183 4.5 10.2 1.0
N A:HIS203 4.5 10.7 1.0
CA A:HIS203 4.5 10.3 1.0
N A:VAL181 4.6 9.4 1.0
CG A:HIS203 4.7 11.1 1.0
O A:HOH1460 4.7 12.5 1.0
C A:VAL181 4.7 9.2 1.0
CA A:HIS182 4.7 9.1 1.0
CA A:GLY184 4.9 9.1 1.0
OD1 A:ASP180 4.9 10.9 1.0
O A:TRP179 5.0 10.3 1.0
CA A:VAL181 5.0 9.3 1.0

Potassium binding site 2 out of 8 in 1zz0

Go back to Potassium Binding Sites List in 1zz0
Potassium binding site 2 out of 8 in the Crystal Structure of A Hdac-Like Protein with Acetate Bound


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of A Hdac-Like Protein with Acetate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1450

b:11.8
occ:1.00
 O A:VAL197 2.6 11.2 1.0
O A:HOH1463 2.6 13.5 1.0
O A:TRP191 2.7 11.4 1.0
O A:HOH1476 2.9 13.0 1.0
O A:ASP194 2.9 13.7 1.0
O A:TYR226 2.9 10.7 1.0
CB A:TRP191 3.6 10.7 1.0
C A:TRP191 3.6 11.6 1.0
OG1 A:THR199 3.7 13.2 1.0
C A:TYR226 3.8 12.0 1.0
C A:VAL197 3.9 12.0 1.0
C A:ASP194 4.0 13.2 1.0
CB A:TYR226 4.0 11.8 1.0
CA A:TRP191 4.2 10.7 1.0
N A:THR199 4.3 9.7 1.0
CG2 A:THR199 4.4 10.2 1.0
N A:ASN227 4.5 10.6 1.0
CA A:TYR226 4.5 11.5 1.0
N A:ASP194 4.5 13.9 1.0
N A:TRP192 4.5 10.2 1.0
CB A:THR199 4.6 9.9 1.0
CA A:LEU198 4.6 11.4 1.0
N A:LEU198 4.7 11.5 1.0
O A:TRP192 4.7 12.4 1.0
CA A:ASP194 4.7 13.6 1.0
C A:TRP192 4.8 11.7 1.0
CA A:TRP192 4.8 11.0 1.0
CB A:ASN227 4.8 10.3 1.0
CA A:ASN227 4.8 11.1 1.0
CG A:TRP191 4.9 11.1 1.0
CA A:VAL197 4.9 11.3 1.0
C A:LEU198 4.9 11.3 1.0
O A:GLY223 4.9 13.1 1.0
CB A:ASP194 4.9 13.6 1.0
N A:VAL197 4.9 12.4 1.0
N A:PRO195 4.9 13.3 1.0

Potassium binding site 3 out of 8 in 1zz0

Go back to Potassium Binding Sites List in 1zz0
Potassium binding site 3 out of 8 in the Crystal Structure of A Hdac-Like Protein with Acetate Bound


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of A Hdac-Like Protein with Acetate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K1549

b:13.8
occ:1.00
 O B:ASP180 2.6 10.7 1.0
O B:HIS182 2.6 11.1 1.0
O B:LEU202 2.7 12.5 1.0
OD2 B:ASP178 2.8 13.9 1.0
OG B:SER201 2.8 12.5 1.0
O B:ASP178 3.0 11.6 1.0
CG B:ASP178 3.1 13.9 1.0
OD1 B:ASP178 3.4 14.7 1.0
C B:ASP180 3.6 10.5 1.0
C B:ASP178 3.7 12.3 1.0
C B:LEU202 3.7 13.1 1.0
C B:HIS182 3.7 10.2 1.0
CB B:SER201 3.9 13.3 1.0
N B:LEU202 3.9 13.0 1.0
N B:ASP180 3.9 11.4 1.0
CB B:ASP178 4.0 12.3 1.0
N B:GLY184 4.0 11.4 1.0
CB B:HIS203 4.0 11.0 1.0
CA B:SER201 4.1 13.1 1.0
CA B:ASP180 4.2 10.5 1.0
C B:SER201 4.3 13.5 1.0
C B:TRP179 4.3 11.6 1.0
CB B:ASP180 4.3 9.8 1.0
CA B:HIS183 4.3 11.0 1.0
N B:TRP179 4.4 11.2 1.0
CA B:TRP179 4.4 11.8 1.0
ND1 B:HIS203 4.4 12.9 1.0
N B:HIS182 4.4 9.7 1.0
CA B:ASP178 4.4 12.1 1.0
ND1 B:HIS142 4.5 13.2 1.0
CE1 B:HIS142 4.5 14.9 1.0
N B:HIS183 4.5 10.3 1.0
C B:HIS183 4.5 10.9 1.0
CA B:LEU202 4.5 13.4 1.0
CA B:HIS203 4.5 10.5 1.0
N B:HIS203 4.6 11.2 1.0
O B:HOH1559 4.7 13.8 1.0
C B:VAL181 4.7 9.9 1.0
CG B:HIS203 4.7 13.2 1.0
N B:VAL181 4.7 9.4 1.0
CA B:HIS182 4.7 9.5 1.0
CA B:GLY184 4.9 11.2 1.0
O B:TRP179 5.0 11.4 1.0

Potassium binding site 4 out of 8 in 1zz0

Go back to Potassium Binding Sites List in 1zz0
Potassium binding site 4 out of 8 in the Crystal Structure of A Hdac-Like Protein with Acetate Bound


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of A Hdac-Like Protein with Acetate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K1550

b:13.0
occ:1.00
 O B:VAL197 2.7 12.2 1.0
O B:TRP191 2.7 11.2 1.0
O B:HOH1584 2.8 14.4 1.0
O B:ASP194 2.8 14.5 1.0
O B:HOH1555 2.8 12.5 1.0
O B:TYR226 2.8 13.0 1.0
CB B:TRP191 3.6 11.6 1.0
C B:TRP191 3.6 11.7 1.0
C B:TYR226 3.7 12.8 1.0
OG1 B:THR199 3.7 13.5 1.0
C B:VAL197 3.9 12.4 1.0
C B:ASP194 3.9 15.0 1.0
CB B:TYR226 4.0 14.5 1.0
CA B:TRP191 4.3 11.1 1.0
N B:THR199 4.3 12.0 1.0
CG2 B:THR199 4.4 13.9 1.0
N B:ASN227 4.5 12.5 1.0
CA B:TYR226 4.5 14.6 1.0
N B:ASP194 4.5 14.9 1.0
N B:TRP192 4.6 11.6 1.0
CA B:LEU198 4.6 12.3 1.0
CB B:THR199 4.6 12.1 1.0
CA B:ASP194 4.7 14.6 1.0
N B:LEU198 4.7 12.2 1.0
O B:TRP192 4.7 13.0 1.0
CB B:ASN227 4.8 12.1 1.0
CA B:TRP192 4.8 12.6 1.0
C B:TRP192 4.8 12.5 1.0
CA B:ASN227 4.8 12.0 1.0
CA B:VAL197 4.8 11.9 1.0
O B:GLY223 4.8 15.2 1.0
CG B:TRP191 4.9 9.6 1.0
C B:LEU198 4.9 13.3 1.0
N B:PRO195 4.9 14.8 1.0
CB B:ASP194 4.9 15.0 1.0
N B:VAL197 5.0 12.0 1.0
CA B:PRO195 5.0 14.8 1.0

Potassium binding site 5 out of 8 in 1zz0

Go back to Potassium Binding Sites List in 1zz0
Potassium binding site 5 out of 8 in the Crystal Structure of A Hdac-Like Protein with Acetate Bound


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of A Hdac-Like Protein with Acetate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1649

b:14.4
occ:1.00
 O C:ASP180 2.5 10.7 1.0
O C:LEU202 2.6 14.7 1.0
O C:HIS182 2.7 12.3 1.0
OG C:SER201 2.7 13.3 1.0
OD2 C:ASP178 2.8 15.1 1.0
O C:ASP178 3.0 13.0 1.0
CG C:ASP178 3.1 15.9 1.0
OD1 C:ASP178 3.5 16.4 1.0
C C:ASP180 3.6 11.1 1.0
C C:ASP178 3.7 12.5 1.0
C C:LEU202 3.7 13.5 1.0
C C:HIS182 3.7 12.1 1.0
N C:LEU202 3.9 12.8 1.0
CB C:SER201 3.9 14.1 1.0
CB C:ASP178 3.9 14.4 1.0
N C:ASP180 4.0 11.2 1.0
N C:GLY184 4.1 12.8 1.0
CB C:HIS203 4.1 11.9 1.0
CA C:SER201 4.1 12.9 1.0
CA C:ASP180 4.2 10.9 1.0
C C:SER201 4.3 12.9 1.0
C C:TRP179 4.3 12.2 1.0
CA C:HIS183 4.3 11.4 1.0
CB C:ASP180 4.3 11.8 1.0
ND1 C:HIS203 4.3 15.1 1.0
N C:TRP179 4.3 12.4 1.0
N C:HIS182 4.4 11.2 1.0
CA C:TRP179 4.4 12.1 1.0
CA C:ASP178 4.4 13.5 1.0
CE1 C:HIS142 4.4 14.3 1.0
N C:HIS183 4.5 11.1 1.0
ND1 C:HIS142 4.5 13.1 1.0
CA C:LEU202 4.5 13.6 1.0
C C:HIS183 4.5 12.1 1.0
N C:HIS203 4.5 12.4 1.0
CA C:HIS203 4.5 11.4 1.0
O C:HOH1655 4.7 14.4 1.0
C C:VAL181 4.7 10.6 1.0
CG C:HIS203 4.7 11.8 1.0
N C:VAL181 4.7 10.3 1.0
CA C:HIS182 4.7 11.6 1.0
CA C:GLY184 4.9 11.3 1.0
OD1 C:ASP180 4.9 12.8 1.0

Potassium binding site 6 out of 8 in 1zz0

Go back to Potassium Binding Sites List in 1zz0
Potassium binding site 6 out of 8 in the Crystal Structure of A Hdac-Like Protein with Acetate Bound


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of A Hdac-Like Protein with Acetate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1650

b:15.0
occ:1.00
 O C:HOH1671 2.7 15.9 1.0
O C:VAL197 2.7 14.4 1.0
O C:TRP191 2.8 12.4 1.0
O C:ASP194 2.8 16.8 1.0
O C:HOH1658 2.9 14.5 1.0
O C:TYR226 2.9 14.0 1.0
CB C:TRP191 3.6 13.3 1.0
C C:TRP191 3.6 13.1 1.0
C C:TYR226 3.7 14.7 1.0
OG1 C:THR199 3.7 14.0 1.0
C C:VAL197 3.9 13.7 1.0
C C:ASP194 4.0 16.8 1.0
CB C:TYR226 4.0 15.4 1.0
CA C:TRP191 4.3 12.9 1.0
N C:THR199 4.3 12.8 1.0
CG2 C:THR199 4.5 13.8 1.0
CA C:TYR226 4.5 15.2 1.0
N C:ASN227 4.5 14.1 1.0
N C:ASP194 4.6 17.1 1.0
N C:TRP192 4.6 14.0 1.0
CA C:LEU198 4.6 13.2 1.0
CB C:THR199 4.6 12.8 1.0
O C:TRP192 4.7 14.3 1.0
CA C:ASP194 4.7 16.6 1.0
N C:LEU198 4.7 13.7 1.0
CA C:TRP192 4.8 14.4 1.0
C C:TRP192 4.8 14.4 1.0
CB C:ASN227 4.8 12.9 1.0
CA C:ASN227 4.8 13.4 1.0
C C:LEU198 4.9 13.9 1.0
CA C:VAL197 4.9 14.1 1.0
CG C:TRP191 4.9 14.0 1.0
O C:GLY223 4.9 16.7 1.0
CB C:ASP194 4.9 17.2 1.0
N C:PRO195 4.9 16.6 1.0
N C:VAL197 5.0 14.5 1.0
CA C:PRO195 5.0 16.5 1.0

Potassium binding site 7 out of 8 in 1zz0

Go back to Potassium Binding Sites List in 1zz0
Potassium binding site 7 out of 8 in the Crystal Structure of A Hdac-Like Protein with Acetate Bound


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of A Hdac-Like Protein with Acetate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K1749

b:15.1
occ:1.00
 O D:HOH1785 2.6 18.9 1.0
O D:VAL197 2.7 13.4 1.0
O D:TRP191 2.7 14.5 1.0
O D:ASP194 2.9 18.3 1.0
O D:TYR226 2.9 14.7 1.0
O D:HOH1784 3.0 14.8 1.0
CB D:TRP191 3.6 14.5 1.0
C D:TRP191 3.6 14.4 1.0
OG1 D:THR199 3.7 14.2 1.0
C D:TYR226 3.7 15.3 1.0
C D:VAL197 3.9 14.0 1.0
C D:ASP194 4.0 17.6 1.0
CB D:TYR226 4.0 16.1 1.0
CA D:TRP191 4.2 13.6 1.0
N D:THR199 4.3 13.7 1.0
CG2 D:THR199 4.4 14.7 1.0
N D:ASN227 4.5 14.8 1.0
CA D:TYR226 4.5 15.4 1.0
N D:TRP192 4.5 15.0 1.0
N D:ASP194 4.5 17.1 1.0
CA D:LEU198 4.6 13.4 1.0
CB D:THR199 4.6 15.3 1.0
CA D:ASP194 4.7 17.7 1.0
N D:LEU198 4.7 13.8 1.0
O D:TRP192 4.7 15.9 1.0
CA D:TRP192 4.8 15.3 1.0
CB D:ASN227 4.8 14.8 1.0
CA D:ASN227 4.8 15.3 1.0
C D:TRP192 4.8 15.8 1.0
C D:LEU198 4.8 14.0 1.0
CG D:TRP191 4.8 15.2 1.0
O D:GLY223 4.9 18.5 1.0
CA D:VAL197 4.9 14.1 1.0
N D:PRO195 4.9 17.1 1.0
CB D:ASP194 5.0 17.5 1.0
CA D:PRO195 5.0 16.9 1.0

Potassium binding site 8 out of 8 in 1zz0

Go back to Potassium Binding Sites List in 1zz0
Potassium binding site 8 out of 8 in the Crystal Structure of A Hdac-Like Protein with Acetate Bound


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of A Hdac-Like Protein with Acetate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K1750

b:15.3
occ:1.00
 O D:ASP180 2.5 10.6 1.0
O D:LEU202 2.7 13.8 1.0
O D:HIS182 2.7 12.7 1.0
OG D:SER201 2.7 13.3 1.0
OD2 D:ASP178 2.8 16.4 1.0
O D:ASP178 3.0 13.6 1.0
CG D:ASP178 3.2 16.8 1.0
OD1 D:ASP178 3.5 18.7 1.0
C D:ASP180 3.6 10.7 1.0
C D:ASP178 3.7 13.6 1.0
C D:LEU202 3.7 13.6 1.0
C D:HIS182 3.8 13.4 1.0
CB D:SER201 3.9 14.8 1.0
N D:LEU202 3.9 13.4 1.0
N D:ASP180 3.9 10.9 1.0
CB D:ASP178 4.0 14.2 1.0
CB D:HIS203 4.0 12.5 1.0
N D:GLY184 4.1 13.0 1.0
CA D:SER201 4.1 13.8 1.0
CA D:ASP180 4.2 10.7 1.0
C D:SER201 4.2 13.8 1.0
C D:TRP179 4.3 12.1 1.0
CB D:ASP180 4.3 11.3 1.0
N D:TRP179 4.3 13.7 1.0
CA D:HIS183 4.3 13.4 1.0
N D:HIS182 4.4 11.0 1.0
ND1 D:HIS203 4.4 15.4 1.0
CA D:TRP179 4.4 13.4 1.0
CA D:ASP178 4.4 14.7 1.0
CA D:LEU202 4.5 14.2 1.0
N D:HIS183 4.5 12.4 1.0
ND1 D:HIS142 4.5 14.4 1.0
CE1 D:HIS142 4.5 15.0 1.0
CA D:HIS203 4.5 12.6 1.0
C D:HIS183 4.5 12.1 1.0
N D:HIS203 4.5 12.9 1.0
O D:HOH1774 4.6 14.9 1.0
N D:VAL181 4.7 10.8 1.0
C D:VAL181 4.7 11.7 1.0
CG D:HIS203 4.7 13.4 1.0
CA D:HIS182 4.7 12.0 1.0
CA D:GLY184 4.9 12.0 1.0
OD1 D:ASP180 4.9 12.0 1.0
CA D:VAL181 5.0 10.9 1.0
O D:TRP179 5.0 12.9 1.0

Reference:

T.K.Nielsen, C.Hildmann, A.Dickmanns, A.Schwienhorst, R.Ficner. Crystal Structure of A Bacterial Class 2 Histone Deacetylase Homologue J.Mol.Biol. V. 354 107 2005.
ISSN: ISSN 0022-2836
PubMed: 16242151
DOI: 10.1016/J.JMB.2005.09.065
Page generated: Mon Aug 12 05:55:38 2024

Last articles

Au in 3M6E
Au in 3P65
Au in 3P64
Au in 3P4Z
Au in 3L47
Au in 3K1L
Au in 3K3G
Au in 3HP3
Au in 3K3F
Au in 3H7G
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy