Atomistry » Potassium » PDB 1a3w-1d7u » 1a3x
Atomistry »
  Potassium »
    PDB 1a3w-1d7u »
      1a3x »

Potassium in PDB 1a3x: Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+

Enzymatic activity of Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+

All present enzymatic activity of Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+:
2.7.1.40;

Protein crystallography data

The structure of Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+, PDB code: 1a3x was solved by M.S.Jurica, A.Mesecar, P.J.Heath, W.Shi, T.Nowak, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.00 / 3.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 108.300, 106.400, 105.500, 90.00, 110.80, 90.00
R / Rfree (%) 22.7 / 34.1

Other elements in 1a3x:

The structure of Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+ also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+ (pdb code 1a3x). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+, PDB code: 1a3x:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 1a3x

Go back to Potassium Binding Sites List in 1a3x
Potassium binding site 1 out of 2 in the Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1002

b:15.0
occ:1.00
OD1 A:ASN51 2.8 15.6 1.0
OD1 A:ASP84 2.8 4.8 1.0
O3P A:PGA1005 2.8 20.0 1.0
O A:THR85 2.9 5.9 1.0
OG A:SER213 3.2 17.8 1.0
NZ A:LYS240 3.4 19.5 1.0
OG A:SER53 3.4 7.2 1.0
O A:ASP84 3.5 4.8 1.0
CG A:ASP84 3.8 4.8 1.0
O4P A:PGA1005 3.9 20.0 1.0
CG A:ASN51 3.9 15.6 1.0
NH2 A:ARG49 4.0 8.7 1.0
C A:THR85 4.0 15.1 1.0
P A:PGA1005 4.1 20.0 1.0
CB A:SER213 4.3 17.8 1.0
C A:ASP84 4.4 2.5 1.0
OD2 A:ASP84 4.4 4.8 1.0
CA A:LYS86 4.4 7.6 1.0
CB A:SER53 4.5 7.2 1.0
ND2 A:ASN51 4.6 15.6 1.0
N A:LYS86 4.7 7.6 1.0
O2P A:PGA1005 4.7 20.0 1.0
CB A:ASP84 4.7 4.8 1.0
CE A:LYS240 4.8 19.5 1.0
N A:GLY87 4.9 8.6 1.0
CB A:ASN51 5.0 15.6 1.0

Potassium binding site 2 out of 2 in 1a3x

Go back to Potassium Binding Sites List in 1a3x
Potassium binding site 2 out of 2 in the Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Pyruvate Kinase From Saccharomyces Cerevisiae Complexed with Pg, MN2+ and K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K1004

b:15.0
occ:1.00
OD1 B:ASN51 2.3 16.5 1.0
OD1 B:ASP84 2.9 11.1 1.0
O3P B:PGA1006 2.9 20.0 1.0
OG B:SER53 3.0 12.3 1.0
O B:THR85 3.0 20.8 1.0
O B:ASP84 3.5 11.1 1.0
CG B:ASN51 3.5 16.5 1.0
OG B:SER213 3.7 14.2 1.0
NZ B:LYS240 3.7 25.7 1.0
NH2 B:ARG49 3.9 2.0 1.0
CG B:ASP84 3.9 11.1 1.0
C B:THR85 4.1 13.9 1.0
CB B:SER53 4.1 12.3 1.0
P B:PGA1006 4.2 20.0 1.0
O4P B:PGA1006 4.2 20.0 1.0
ND2 B:ASN51 4.2 16.5 1.0
O2P B:PGA1006 4.4 20.0 1.0
CA B:LYS86 4.4 25.9 1.0
C B:ASP84 4.4 5.6 1.0
OD2 B:ASP84 4.6 11.1 1.0
CB B:ASN51 4.6 16.5 1.0
N B:LYS86 4.6 25.9 1.0
N B:SER53 4.7 6.6 1.0
CB B:SER213 4.7 14.2 1.0
CB B:ASP84 4.7 11.1 1.0
CA B:SER53 4.9 6.6 1.0
CA B:ASN51 4.9 22.2 1.0
N B:PHE52 4.9 31.8 1.0

Reference:

M.S.Jurica, A.Mesecar, P.J.Heath, W.Shi, T.Nowak, B.L.Stoddard. The Allosteric Regulation of Pyruvate Kinase By Fructose-1,6-Bisphosphate. Structure V. 6 195 1998.
ISSN: ISSN 0969-2126
PubMed: 9519410
DOI: 10.1016/S0969-2126(98)00021-5
Page generated: Mon Aug 12 04:00:29 2024

Last articles

Al in 8SHA
Al in 8SGL
Al in 8SH9
Al in 8SGC
Al in 8SG9
Al in 8SFF
Al in 8SG8
Al in 8R1A
Al in 8Q75
Al in 8OIE
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy