Potassium in PDB 9r2o: De Novo Designed N5 Protein Fold

The structure of De Novo Designed N5 Protein Fold, PDB code: 9r2o was solved by M.Pacesa, Y.Miao, S.Georgeon, J.Schmidt, B.E.Correia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.83 / 2.09
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	112.71, 38.25, 77.47, 90, 112.64, 90
R / Rfree (%)	24.2 / 27.2

The binding sites of Potassium atom in the De Novo Designed N5 Protein Fold (pdb code 9r2o). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the De Novo Designed N5 Protein Fold, PDB code: 9r2o:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the De Novo Designed N5 Protein Fold


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of De Novo Designed N5 Protein Fold within 5.0Å range: probe atom residue distance (Å) B Occ A:K202 b:55.8 occ:1.00 O A:LYS65 2.9 31.4 1.0 OE2 A:GLU69 3.2 34.8 1.0 CE A:LYS65 3.3 41.5 1.0 CG A:GLU69 3.4 32.6 1.0 C A:LYS65 3.5 30.7 1.0 CA A:LYS65 3.5 32.3 1.0 CB A:LYS65 3.6 33.5 1.0 NZ A:LYS65 3.7 34.3 1.0 CD A:GLU69 3.8 35.9 1.0 CB A:GLN68 4.0 26.8 1.0 CD A:LYS65 4.1 52.3 1.0 N A:GLU69 4.3 26.7 1.0 CG A:LYS65 4.5 35.9 1.0 NE2 A:GLN68 4.5 23.3 1.0 CB A:GLU69 4.6 29.7 1.0 C A:GLN68 4.6 30.4 1.0 N A:LEU66 4.7 28.8 1.0 CA A:GLU69 4.8 27.1 1.0 CA A:GLN68 4.8 27.4 1.0 N A:LYS65 5.0 27.3 1.0 CD A:GLN68 5.0 26.9 1.0 OE1 A:GLU69 5.0 32.7 1.0

Potassium binding site 2 out of 2 in the De Novo Designed N5 Protein Fold


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of De Novo Designed N5 Protein Fold within 5.0Å range: probe atom residue distance (Å) B Occ A:K203 b:52.7 occ:1.00 O A:HOH307 2.6 35.8 1.0 OG1 A:THR90 2.7 26.1 1.0 OG A:SER111 2.9 30.6 1.0 O A:HOH347 3.0 30.6 1.0 CG A:LYS89 3.6 32.1 1.0 CB A:SER111 3.7 23.1 1.0 CG A:LEU107 3.8 34.3 1.0 CB A:THR90 3.8 30.4 1.0 CA A:THR90 3.9 26.6 1.0 N A:THR90 4.0 25.8 1.0 O A:THR86 4.0 19.5 1.0 CD2 A:LEU107 4.0 30.2 1.0 CD1 A:LEU107 4.1 23.3 1.0 OE1 A:GLU93 4.1 51.9 1.0 CD A:LYS89 4.2 32.4 1.0 NZ A:LYS89 4.2 28.9 1.0 O A:LEU107 4.3 26.0 1.0 C A:LYS89 4.5 28.1 1.0 CG2 A:THR90 4.5 25.6 1.0 OE2 A:GLU93 4.5 36.7 1.0 CG2 A:THR86 4.5 23.8 1.0 CD A:GLU93 4.5 39.8 1.0 O A:LYS89 4.7 26.9 1.0 CE A:LYS89 4.8 25.2 1.0 C A:LEU107 4.8 31.4 1.0 CB A:LYS89 5.0 27.0 1.0

Y.Miao, M.Pacesa, S.Georgeon, J.Schmidt, T.Lu, P.Huang, B.E.Correia. Reimagine Accessibility of Protein Space with Generative Model To Be Published.